GNF-5

Alias: GNF 5; GNF5; GNF-5;
Cat No.:V0674 Purity: ≥98%
GNF-5 (GNF 5; GNF5), aGNF-2 analog with better pharmacokinetic profiles, is a potent,selective and allosteric/non-ATP competitive Bcr-Abl inhibitor with potential anticancer activity.
GNF-5 Chemical Structure CAS No.: 778277-15-9
Product category: Bcr-Abl
This product is for research use only, not for human use. We do not sell to patients.
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Purity & Quality Control Documentation

Purity: ≥98%

Product Description

GNF-5 (GNF 5; GNF5), a GNF-2 analog with better pharmacokinetic profiles, is a potent, selective and allosteric/non-ATP competitive Bcr-Abl inhibitor with potential anticancer activity. It inhibits Bcr-Abl (wild-type Abl) with an IC50 of 220 nM. It exhibits excellent in vivo anticancer efficacy in Ba/F3.p210 xenograft mouse model.

Biological Activity I Assay Protocols (From Reference)
ln Vitro
GNF-5 inhibits wild-type Abl with an IC50 of 0.22 µM, but not myristate site mutant E505K (IC50 >10 µM) [1].
ln Vivo
GNF-5 has appropriate pharmacokinetic properties (5 mg/kg IV or 20 mg/kg oral)[1]. GNF-5 is effective in vivo when taken orally, twice daily for seven days at 50 or 100 mg/kg, however relapses are possible[1]. In vivo, nilotinib with T315I Bcr-Abl combo is inhibited by GNF-5 (75 mg/kg, bid)[1].
Cell Assay
Cell Viability Assay[1]
Cell Types: wild type and mutant Bcr- Abl expressing Ba/F3 cells
Tested Concentrations: 0.2, 0.8 and 1.6 μM
Incubation Duration: 48 h
Experimental Results: Inhibited wild-type Abl in a non-ATP competitive fashion.
Animal Protocol
Animal/Disease Models: Male balb/c (Bagg ALBino) mouse[1]
Doses: 5 mg/kg, 20 mg/kg
Route of Administration: 5 mg/kg intravenously (iv)or 20 mg/kg orally
Experimental Results: AUC_inf (min*ug/mL) 292.37 AUC_inf (hrs*nM 11647 Cmax(nM) 4386.08 Tmax(hrs) 0.50 Clast (nM) 636.16 T1 /2(hrs) 2.30 Vss(L/kg) 9.18 F (%) 44.82 Animal/Disease Models: p210 xenograft model[1]
Doses: 50 or 100 mg/kg
Route of Administration: po (oral gavage) twice (two times) daily, for 7 days
Experimental Results: Could normalize blood counts and spleen size.

Animal/Disease Models: Bone marrow transduction/transplantation model[1]
Doses: 75 mg/kg
Route of Administration: twice (two times) daily
Experimental Results: demonstrated no significant response (alone). demonstrated no toxicity and had a strong and sustained inhibition of Bcr- Abl-mediated signaling combination with nilotinib.
References
[1]. Zhang J, et al. Targeting Bcr-Abl by combining allosteric with ATP-binding-site inhibitors. Nature. 2010 Jan 28;463(7280):501-6.
[2]. Meirson T, et al. Targeting invadopodia-mediated breast cancer metastasis by using ABL kinase inhibitors. Oncotarget. 2018 Apr 24;9(31):22158-22183.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C20H17F3N4O3
Molecular Weight
418.37
CAS #
778277-15-9
Related CAS #
778277-15-9
SMILES
FC(OC1C([H])=C([H])C(=C([H])C=1[H])N([H])C1C([H])=C(C2C([H])=C([H])C([H])=C(C(N([H])C([H])([H])C([H])([H])O[H])=O)C=2[H])N=C([H])N=1)(F)F
InChi Key
IIQUYGWWHIHOCF-UHFFFAOYSA-N
InChi Code
InChI=1S/C20H17F3N4O3/c21-20(22,23)30-16-6-4-15(5-7-16)27-18-11-17(25-12-26-18)13-2-1-3-14(10-13)19(29)24-8-9-28/h1-7,10-12,28H,8-9H2,(H,24,29)(H,25,26,27)
Chemical Name
N-(2-Hydroxyethyl)-3-[6-[[4-(trifluoromethoxy)phenyl]amino]-4-pyrimidinyl]benzamide
Synonyms
GNF 5; GNF5; GNF-5;
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: 83 mg/mL (198.4 mM)
Water:<1 mg/mL
Ethanol: 20 mg/mL warmed (47.8 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (5.98 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.5 mg/mL (5.98 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 2.5 mg/mL (5.98 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.3902 mL 11.9511 mL 23.9023 mL
5 mM 0.4780 mL 2.3902 mL 4.7805 mL
10 mM 0.2390 mL 1.1951 mL 2.3902 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

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  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Biological Data
  • GNF-5

    Cellular and enzymatic inhibition of wild-type and mutants by combination treatments.Nature.2010 Jan 28;463(7280):501-6.

  • GNF-5

    In vivo efficacy studies with GNF-5 on wild-type and T315I Bcr-Abl dependent proliferation in xenograft and bone marrow transplantation models.Nature.2010 Jan 28;463(7280):501-6.

  • GNF-5

    Hydrogen exchange mass spectrometry upon binding of GNF-5 to Abl.Nature.2010 Jan 28;463(7280):501-6.

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