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GNE-781

Alias: GNE781; GNE 781; 3-(7-(Difluoromethyl)-6-(1-methyl-1H-pyrazol-4-yl)-3,4-dihydroquinolin-1(2H)-yl)-N-methyl-1-(tetrahydro-2H-pyran-4-yl)-1,4,6,7-tetrahydro-5H-pyrazolo[4,3-c]pyridine-5-carboxamide; CHEMBL4097025; 3-[7-(difluoromethyl)-6-(1-methyl-1H-pyrazol-4-yl)-3,4-dihydroquinolin-1(2H)-yl]-N-methyl-1-(oxan-4-yl)-1,4,6,7-tetrahydro-5H-pyrazolo[4,3-c]pyridine-5-carboxamide; GNE-781.
Cat No.:V4553 Purity: ≥98%
GNE-781 (GNE781) is a novel, highly potent and selectiveinhibitor of CBP (Cyclic Adenosine Monophosphate Response Element Binding Protein, Binding Protein) with immunomodulatory and anticancer effects.
GNE-781
GNE-781 Chemical Structure CAS No.: 1936422-33-1
Product category: Epigenetic Reader Domain
This product is for research use only, not for human use. We do not sell to patients.
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Purity & Quality Control Documentation

Purity: ≥98%

Product Description

GNE-781 (GNE781) is a novel, highly potent and selective inhibitor of CBP (Cyclic Adenosine Monophosphate Response Element Binding Protein, Binding Protein) with immunomodulatory and anticancer effects. It inhibits CBP with an IC50 of 0.94 nM in TR-FRET assay. GNE-781 also inhibits BRET and BRD4(1) with IC50s of 6.2 nM and 5100 nM, respectively. GNE-781 showed TR-FRET IC50 = 0.94 nM, BRET IC50 = 6.2 nM, BRD4(1) IC50 = 5,100 nΜ) that maintained good in vivo PK properties in multiple species. GNE-781 displays anti-tumor activity in an AML tumor model and was also shown to decrease Foxp3 transcript levels in a dose dependent manner.

Biological Activity I Assay Protocols (From Reference)
Targets
IC50: 0.94 nM (CBP), 6.2 nM (BRET), 5100 nΜ (BRD4(1))[1]
GNE-781 is a highly developed, strong, and specific bromodomain inhibitor of the CBP (cyclic adenosine monophosphate response element-binding protein). The transcript levels of FOXP3 (forkhead box P3) are decreased by GNE-781. Analysis of a subset of bromodomains revealed that GNE-781 has significant selectivity for both CBP (5425-fold) and P300 (4250-fold), and is very selective for CBP/P300. GNE-781 exhibits cellular potency and selectivity in the ideal ratio—5425 times higher than BRD4 (1)—[1].
ln Vitro
GNE-781 is a highly developed, strong, and specific bromodomain inhibitor of the CBP (cyclic adenosine monophosphate response element-binding protein). The transcript levels of FOXP3 (forkhead box P3) are decreased by GNE-781. Analysis of a subset of bromodomains revealed that GNE-781 has significant selectivity for both CBP (5425-fold) and P300 (4250-fold), and is very selective for CBP/P300. GNE-781 exhibits cellular potency and selectivity in the ideal ratio—5425 times higher than BRD4 (1)—[1].
In a biochemical TR-FRET assay, GNE-781 inhibited the CBP bromodomain with an IC50 of 0.94 nM.
In a cellular BRET assay for target engagement, the IC50 was 6.21 nM.
It potently downregulated Myc protein expression in cells with an EC50 of 6.63 nM.
BROMOscan profiling confirmed its high selectivity, showing Kd >10,000 nM for most off-target bromodomains, except for weak activity against BRD4 (full-length, short isoform, Kd=5300 nM) and BRDT(1) (Kd=4900 nM). [1]
ln Vivo
In mice bearing MOLM-16 AML xenografts, GNE-781 (3-30 mg/kg; po; twice daily for 21 days) suppresses tumor growth inhibition (%TGI) at doses of 3, 10, and 30 mg/kg 73%, 71%, and 89%, respectively [1]. Foxp3 transcript levels are lowered in a dose-dependent manner by GNE-781. At doses as low as 3 mg/kg, GNE-781 (3-30 mg/kg) inhibits MYC at 2 and 8 hours; at 10 and 30 mg/kg, the greatest inhibition (87% and 88% inhibition) is reached at 2 hours [1].
In an AML MOLM-16 subcutaneous xenograft model, a single oral dose of GNE-781 induced rapid and profound suppression of MYC expression in tumors.
At 2 hours post-dose, a 3 mg/kg dose reduced MYC levels to 16% of vehicle control. Higher doses (10 and 30 mg/kg) achieved maximal suppression to 12-13% of control at the same time point.
The MYC suppression was transient, with levels returning to near baseline by 16-24 hours across all doses tested. [1]
Enzyme Assay
Time-Resolved Fluorescence Resonance Energy Transfer Assays[1]
Compound potencies were evaluated in a panel of biochemical bromodomain binding assays. Binding of biotinylated small-molecule ligands to recombinant His-tagged bromodomains was assessed by time-resolved fluorescence resonance energy transfer (TR-FRET). Test compounds that compete with the biotinylated ligand for bromodomain binding reduce the TR-FRET signal. All biochemical assay protocols were carried out as previously described.
Cellular Assay Protocols[1]
The CBP BRET assay was carried out as previously described. To determine the inhibition of MYC expression, MV-4-11 cells (ATCC) were plated at 10000 cells per well in 96-well plates in RPMI1640 media supplemented with 10% fetal bovine serum and 2 mM l-glutamine. Test compounds diluted in DMSO were transferred to the cell plates, keeping final DMSO concentration consistent at 0.1%, and incubated for 4 h at 37 °C. Lysis and analysis for MYC expression were carried out using QuantiGene 2.0 reagents and following the vendor’s instructions. Luminescence was read using an EnVision plate reader and EC50s generated in XLFit using a four-parameter nonlinear regression fit.
The binding affinity of GNE-781 for a broad panel of bromodomains was determined using the BROMOscan platform. This assay measures competition between the test compound and an immobilized ligand for binding to soluble, DNA-tagged bromodomain proteins, from which dissociation constants (Kd) are derived. [1]
The inhibitory potency (IC50) of GNE-781 against the CBP bromodomain was determined using a Time-Resolved Fluorescence Resonance Energy Transfer (TR-FRET) binding assay. [1]
Cell Assay
In Vitro Evaluation of 19 (GNE-781) on Tregs[1]
Human naïve CD4+T cells were isolated from PBMCs of healthy donors using naïve CD4+T Cell Isolation Kit II and differentiated to iTregs for 4 days using plate-bound anti-CD3 (5 μg/mL), soluble anti-CD28 (3 μg/mL), plus rTGFβ (5 ng/mL), and rIL-2 (10 ng/mL) in complete RPMI-1640 medium (10% FCS, 50 μM 2-mercaptoethanol, 10% penicillin/streptomycin, 10% NEAA, 10% sodium pyruvate). Compound 19 was used at 2 μM and titrated down at 2× dilution.
iTregs were stained using antibodies against surface markers CD4 FITC (clone OKT-4) and CD25 Pacific Blue (clone BC96), fixed/permeabilized with the Foxp3/Transcription Factor Staining Buffer Set, and labeled for intracellular Foxp3 APC (clone 259D/C7). iTregs were stained for viability using fixable viability dye efluor 781. Samples were acquired on a BD LSR Fortessa using FACSDiva software. Data were analyzed using the FlowJo software.
Total RNA was isolated from iTregs using RNeasy, including an on-column DNase I digestion. cDNA was prepared using High Capacity cDNA Reverse Transcriptase Kit. Quantitative RT-PCR was performed to determine Foxp3 gene expression levels with the ABI 7900 HT Fast Real-Time PCR System. Gene expression data was normalized to B2M as a housekeeping gene.
Cellular target engagement was assessed using a Bioluminescence Resonance Energy Transfer (BRET) assay, which reported an IC50 of 6.21 nM for GNE-781 against CBP in a cellular context.
The functional consequence of CBP bromodomain inhibition was measured by quantifying the downregulation of Myc protein expression via immunoassay, yielding an EC50 of 6.63 nM. [1]
Animal Protocol
Mice[1] [1]
Twelve female CD-1 mice are used. All animals are 6-9 weeks old at the time of study and weighed between 20 and 35 g. Animals (n=3 per dosing route) are dosed with 10 or GNE-781 at 1 mg/kg iv (in propyl ethylene glycol 400 (35% v/v) and water (65% v/v)) or 5 mg/kg po (suspended in 0.5% w/v methylcellulose, 0.2% w/v Tween 80). Food and water are available ad libitum to all animals. Serial blood samples (15 μL) are collected by tail nick at 0.033, 0.083, 0.25, 0.5, 1, 3, 8, and 24 h after the intravenous administration and 0.083, 0.25, 0.5, 1, 3, 8, and 24 h after the oral administration. All blood samples are diluted with 60 μL of water containing 1.7 mg/mL EDTA and kept at -80 °C until analysis[1]. Rats[1] Twelve male Sprague-Dawley rats are used. All animals are 6-9 weeks old at the time of study and weighed between 200 and 300 g. Animals (n=3 per dosing route) are dosed with 10 or GNE-781 at 1 mg/kg iv (in propyl ethylene glycol 400 (35% v/v) and water (65% v/v)) or 5 mg/kg po (suspended in 0.5% w/v methylcellulose, 0.2% w/v Tween 80). Food and water are available ad libitum to animals in the iv groups. Animals in po groups are fasted overnight and food withheld until 4 h postdose. Approximately 250 μL of blood are collected via the catheter at 0.033, 0.083, 0.25, 0.5, 1, 2, 4, 8, and 24 h after the intravenous or oral administration. All blood samples are collected into tubes containing 5 μL of 0.5 M K2EDTA and processed for plasma. Samples are centrifuged (2500g for 15 min at 4°C) within 1 h of collection, and plasma samples are kept at -80 °C until analysis[1].
In Vivo PK of 10 and 19 (GNE-781)[1]
Mouse PK: Twelve female CD-1 mice were used. All animals were 6–9 weeks old at the time of study and weighed between 20 and 35 g. Animals (n = 3 per dosing route) were dosed with 10 or 19 at 1 mg/kg iv (in propyl ethylene glycol 400 (35% v/v) and water (65% v/v)) or 5 mg/kg po (suspended in 0.5% w/v methylcellulose, 0.2% w/v Tween 80). Food and water were available ad libitum to all animals. Serial blood samples (15 μL) were collected by tail nick at 0.033, 0.083, 0.25, 0.5, 1, 3, 8, and 24 h after the intravenous administration and 0.083, 0.25, 0.5, 1, 3, 8, and 24 h after the oral administration. All blood samples were diluted with 60 μL of water containing 1.7 mg/mL EDTA and kept at −80 °C until analysis.

Rat PK: [1]
Twelve male Sprague–Dawley rats were used. All animals were 6–9 weeks old at the time of study and weighed between 200 and 300 g. Animals (n = 3 per dosing route) were dosed with 10 or 19 at 1 mg/kg iv (in propyl ethylene glycol 400 (35% v/v) and water (65% v/v)) or 5 mg/kg po (suspended in 0.5% w/v methylcellulose, 0.2% w/v Tween 80). Food and water were available ad libitum to animals in the iv groups. Animals in po groups were fasted overnight and food withheld until 4 h postdose. Approximately 250 μL of blood were collected via the catheter at 0.033, 0.083, 0.25, 0.5, 1, 2, 4, 8, and 24 h after the intravenous or oral administration. All blood samples were collected into tubes containing 5 μL of 0.5 M K2EDTA and processed for plasma. Samples were centrifuged (2500g for 15 min at 4 °C) within 1 h of collection, and plasma samples were kept at −80 °C until analysis.

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Dog PK: [1]
Twelve non-naïve male beagle dogs were used. All animals were 6 months to 2 years old at the time of study and weighed between 6 and 10 kg. Animals (n = 3 per dosing route) were dosed with 10 or 19 at 1 mg/kg iv (in ethanol (20% v/v), propyl ethylene glycol 400 (15% v/v) and water (65% v/v)) or 5 mg/kg po (suspended in 0.5% w/v methylcellulose, 0.2% w/v Tween 80). Food and water were available ad libitum to animals in the iv groups. Animals in po groups were fasted overnight and food withheld until 4 h postdose. Approximately 800 μL of blood was collected from a peripheral vessel at predose, 0.033, 0.083, 0.25, 0.5, 1, 3, 6, 9, and 24 h after the intravenous administration and predose, 0.083, 0.25, 0.5, 1, 3, 6, 9, and 24 h after the oral administration. All blood samples were collected into tubes containing 10 μL of 0.5 M K2EDTA and processed for plasma. Samples were centrifuged (3000g for 10 min at 4 °C) within 1 h of collection, and plasma samples were kept at −80 °C until analysis.

Monkey PK: [1]
Twelve non-naïve male cynomolgus monkeys were used. All animals were at least 2 years old at the time of study and weighed between 2 and 5 kg. Animals (n = 3 per dosing route) were dosed with 10 or 19 1 mg/kg iv (in ethanol (20% v/v), propyl ethylene glycol 400 (15% v/v) and water (65% v/v)) or 5 mg/kg po (suspended in 0.5% w/v methylcellulose, 0.2% w/v Tween 80). Food and water were available ad libitum to animals in the iv groups. Animals in po groups were fasted overnight and food withheld until 4 h postdose. Approximately 800 μL of blood was collected from a peripheral vessel at predose, 0.033, 0.083, 0.25, 0.5, 1, 3, 6, 9, and 24 h after the intravenous administration and predose, 0.083, 0.25, 0.5, 1, 3, 6, 9, and 24 h after the oral administration. All blood samples were collected into tubes containing 10 μL of 0.5 M K2EDTA and processed for plasma. Samples were centrifuged (3000g for 10 min at 4 °C) within 1 h of collection, and plasma samples were kept at −80 °C until analysis.

Bio-analytical method of PK samples: [1]
Concentrations of 10 and 19 were determined by a nonvalidated LC-MS/MS assay. The diluted blood samples were prepared for analysis by placing a 25 μL aliquot into a 96-well plate followed by the addition of 200 μL of acetonitrile containing an internal standard mixture (0.1 μg/mL indomethacin). The samples were vortexed and centrifuged at 4000 rpm for 10 min at 4 °C; 50 μL of the supernatant was diluted with 150 μL of water, and 10 μL of the solution was injected onto an analytical column. An Acquity UPLC system coupled with an API 4000 mass spectrometer was used for sample analysis. The mobile phases were 0.025% FA and 1 mM NH4OAc in water/ACN (v:v, 95:5) (A) and 0.025% FA and 1 mM NH4OAc in ACN/water (v:v, 95:5) (B). The gradient was as follows: starting at 10% B and increased to 65% B for 1.2 min, then to 95% for 0.6 min, maintained at 95% B for 0.2 min, then decreased to 10% B within 0.01 min. The total flow rate was 0.6 mL/min, and samples were injected onto an ACE 3 AQ (2.1 mm × 100 mm, 3 μm) analytical column with a total run time of 2 min. Data were acquired using multiple reactions monitoring (MRM) in positive ion electrospray mode with an operating source temperature of 550 °C. The MRM transition was m/z 511.400 → 471.400 for 10, 526.400 → 486.400 for 19, and 357.900 → 139.000 for indomethacin. The lower and upper limits of quantitation of the assay for 10 were 0.002 and 13.1 μM, respectively. The lower and upper limits of quantitation of the assay for 19 were 0.002 and 12.7 μM, respectively.

In Vivo Evaluation of 19 in MOLM-16 AML PK/PD and Antitumor Efficacy Model[1]
Female C.B-17 SCID.bg mice that were 8–9 weeks old and weighed 20–24 g were used. They were inoculated with five million MOLM-16 leukemia acute myelogenic cells (suspended in a 1:1 mixture of Hank’s Balanced Salt Solution containing Matrigel at a 1:1 ratio) in the right flank subcutaneously. Tumors were monitored until they reached a mean tumor volume of 130–300 mm3. The mean tumor volume across all eight groups was 260 ± 34.5 mm3 (mean ± SD) at the initiation of dosing. Mice were given 0 (vehicle–0.5% methylcellulose, 0.2% Tween-80), 3, 10, and 30 mg/kg of compound 19 by gavage, twice daily (BID) for 21 days in a volume of 100 μL. Tumor volumes were measured in two dimensions (length and width) using Ultra Cal-IV calipers (model 54-10-111; Fred V. Fowler Co., Newton, MA) and analyzed using Excel, version 11.2. The tumor volume was calculated with the following formula: tumor size (mm3) = (longer measurement × shorter measurement2) × 0.5. Animal body weights were measured using an Adventura Pro AV812 scale. Percent weight change was calculated using the following formula: group percent weight change = (new weight – initial weight)/initial weight) × 100. Plasma, tumor, and brain samples were collected at 2 h postdose. To analyze the repeated measurement of tumor volumes from the same animals over time, a mixed-modeling approach was used. This approach addresses both repeated measurements and modest dropouts due to any nontreatment related removal of animals before the end of study. Cubic regression splines were used to fit a nonlinear profile to the time courses of log 2 tumor volume at each dose level. The nonlinear profiles were then related to dose within the mixed model. Tumor growth inhibition as a percentage of vehicle was calculated as the percentage of the area under the fitted tumor volume–time curve (AUC) per day for each dose group in relation to the vehicle, using the following formula: %TGI = 100 × [1 – (AUCdose per day/AUCvehicle per day)].

Concentrations of 19 were determined by a nonvalidated LC-MS/MS assay. The plasma samples were prepared for analysis by placing a 25 μL aliquot into a 96-well plate. The tumor samples were collected and weighed. Four volume of water by tissue weight was added. Using a bead beating homogenizer, the tissue samples were homogenized and 25 μL of each was aliquoted into a 96-well plate. A volume of 200 μL of acetonitrile containing an internal standard (labetalol) was added to the sample. The samples were vortexed and centrifuged at 4000 rpm for 10 min, and 50 μL of the supernatant was diluted with 150 μL of water. A 10 μL injection volume was used for analysis on a SIL-30ACMP autosampler system was linked to LC-30AD pumps, coupled with an API 5500 QTrap mass spectrometer, was used for sample analysis. The mobile phases were 0.1% FA (formic acid) in water (A) and 0.1% FA in MeCN (B). The gradient was as following: starting at 10% B and increased to 90% B in 0.6 min, maintained at 90% B for 0.2 min, then decreased to 10% B within 0.1 min. The total flow rate was 1.2 mL/min and column for separation was Kinetex XB-C18 column (50 mm × 2.1 mm, 2.6 μm) with a total run time of 1 min. Data were acquired using multiple reactions monitoring (MRM) in positive ion electrospray mode with an operating source temperature of 550 °C. The MRM transition was m/z 526.1 → 486.2 for 19 and 329.076 → 294.1 for labetalol. The lower and upper limits of quantitation of the assay for 19 were 0.002 and 39 μM, respectively.


The in vivo pharmacodynamic (PD) and pharmacokinetic (PK) properties of GNE-781 were evaluated in female SCID mice bearing subcutaneous MOLM-16 AML tumors.
The compound was formulated in a vehicle containing 0.5% methylcellulose and 0.2% Tween-80.
Mice received a single oral gavage dose of the compound at 3, 10, or 30 mg/kg (n=3 per group per time point).
Tumors and plasma were collected at 2, 4, 8, 16, and 24 hours post-dose.
Tumor lysates were analyzed for MYC protein levels by ELISA to assess the PD effect.
Plasma and tumor homogenate concentrations of GNE-781 were determined by LC-MS/MS. [1]
ADME/Pharmacokinetics
Following oral administration to tumor-bearing mice, total plasma and tumor exposures of GNE-781 reached low to moderate levels in a dose-dependent manner, but with relatively short durations. For example, after a dose of 30 mg/kg, the total plasma concentration at 2 hours was 2.23 µM and the tumor concentration was 0.46 µM. After adjusting for plasma protein binding (PPB, assumed to be 94% based on the relevant compound), the free plasma concentration at 2 hours (30 mg/kg) was 0.13 µM and the free tumor concentration was 0.027 µM. Exposures decreased rapidly, with free drug concentrations falling below quantifiable levels 16 hours after administration. [1]
Toxicity/Toxicokinetics
GNE-781 was screened against 44 non-target receptors, ion channels, and enzymes (CEREP target library) at a concentration of 10 µM. The results showed that it had the most significant inhibitory effect on NK1 (neurokine 1) receptor (inhibition rate of 39%). The inhibitory effect on hERG and roliplan site (PDE4) was weak (23-30%). The inhibition rate of most other targets was less than 20%. In a broad-spectrum kinase-selective target library (containing 215 kinases) at a concentration of 1 µM, GNE-781 only had an inhibition rate of more than 25% on CamKIV (inhibition rate of 25.3%), Cot (inhibition rate of 23.7%), and MAP4K4 (inhibition rate of 25.3%). The inhibition rate of most other kinases was less than 20%. [1]
References

[1]. GNE-781, A Highly Advanced Potent and Selective Bromodomain Inhibitor of Cyclic Adenosine Monophosphate Response Element Binding Protein, Binding Protein (CBP). J Med Chem. 2017 Nov 22;60(22):9162-9183.

Additional Infomation
Inhibiting the bromine domain of the transcriptional regulator CBP/P300 is a novel and promising strategy in cancer therapy. Researchers recently unveiled an in vivo chemical tool 1 (GNE-272) targeting the bromine domain of CBP, exhibiting moderate potency and selectivity for BRD4 (1). To find a more potent and selective CBP inhibitor, we employed a structure-based drug design approach. Modifying the aniline group in compound 1 to a tetrahydroquinoline structure resulted in a two-fold increase in selectivity while maintaining the original potency. Structure-activity relationship studies, combined with further structure-based designs targeting LPF platforms, BC rings, and KAc regions, significantly improved potency and selectivity, ultimately identifying compound 19 (GNE-781, TR-FRET IC50 = 0.94 nM, BRET IC50 = 6.2 nM; BRD4(1) IC50 = 5100 nM) that exhibited good pharmacokinetic properties in various animal models. Compound 19 exhibited antitumor activity in an acute myeloid leukemia (AML) tumor model and was able to reduce Foxp3 transcription levels in a dose-dependent manner. [1] Researchers have identified a highly efficient and selective in vivo probe (19, GNE-781) for the bromine domain of CBP, which is suitable for studying the biological properties of CBP and avoids the complexity of BET inhibitors. Our study began with recently published compound 1 (TR-FRET IC50 = 20 nM, BRET IC50 = 410 nM, BRD4 IC50 = 13,000 nM), which has moderate activity for the bromine domain of CBP and 650-fold higher selectivity for BRD4. By restricting the aniline group in compound 1 to tetrahydroquinoline 3, the activity of compound 3 was maintained and the selectivity was increased by 2-fold compared to compound 1. Through structure-activity relationship studies and structure-based optimization targeting the LPF platform, BC ring, and KAc region, we identified compound 10 (TR-FRET IC50 = 1.1 nM, BRET IC50 = 12 nM, BRD4 IC50 = 4200 nM). Further analysis of this compound showed that it could penetrate the central nervous system, leading to adverse central nervous system reactions. Subsequent optimization focused on increasing its total prostate-specific antigen (tPSA) by introducing a hydrogen bond donor. By converting the Asn-bound acetamide of compound 10 to methylurea, non-central nervous system penetrating compound 19 (TR-FRET IC50 = 0.94 nM, BRET IC50 = 6.2 nM, BRD4(1) IC50 = 5100 nM) was successfully identified. This compound showed a suitable balance in terms of cellular potency, selectivity (5425-fold higher selectivity for BRD4), and in vivo pharmacokinetics. The superior potency and selectivity of compound 19 allow for a clear distinction between its pharmacological effects and its inhibitory effects on the CBP and BET bromodomains. In vivo, compound 19 modulates MYC expression, consistent with its antitumor activity in AML tumor models. In vitro studies have shown that compound 19 inhibits FOXP3 expression and Treg function, further suggesting that CBP bromodomain inhibitors may be a novel small molecule cancer immunotherapy approach. [1]
GNE-781 is a highly potent and selective CBP/EP300 bromodomain inhibitor developed from an earlier lead compound.
The co-crystal structure of GNE-781 with the CBP bromodomain (PDB: 5W0E) and BRD4(1) bromodomain (PDB: 5VZS) was resolved, revealing its binding mode and providing a structural basis for its high selectivity for BRD4.
By calculating dihedral scans, the conformational preference of the core skeleton of the compound and the influence of ortho-substituents on planarity and binding energy were studied. [1]
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C27H33F2N7O2
Molecular Weight
525.593432188034
Exact Mass
525.27
Elemental Analysis
C, 61.70; H, 6.33; F, 7.23; N, 18.65; O, 6.09
CAS #
1936422-33-1
PubChem CID
132275066
Appearance
Light yellow to yellow solid powder
LogP
2.7
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
7
Rotatable Bond Count
4
Heavy Atom Count
38
Complexity
833
Defined Atom Stereocenter Count
0
InChi Key
CQCWHSDMJBAGDC-UHFFFAOYSA-N
InChi Code
InChI=1S/C27H33F2N7O2/c1-30-27(37)34-9-5-23-22(16-34)26(32-36(23)19-6-10-38-11-7-19)35-8-3-4-17-12-20(18-14-31-33(2)15-18)21(25(28)29)13-24(17)35/h12-15,19,25H,3-11,16H2,1-2H3,(H,30,37)
Chemical Name
3-[7-(difluoromethyl)-6-(1-methylpyrazol-4-yl)-3,4-dihydro-2H-quinolin-1-yl]-N-methyl-1-tetrahydropyran-4-yl-6,7-dihydro-4H-pyrazolo[4,3-c]pyridine-5-carboxamide
Synonyms
GNE781; GNE 781; 3-(7-(Difluoromethyl)-6-(1-methyl-1H-pyrazol-4-yl)-3,4-dihydroquinolin-1(2H)-yl)-N-methyl-1-(tetrahydro-2H-pyran-4-yl)-1,4,6,7-tetrahydro-5H-pyrazolo[4,3-c]pyridine-5-carboxamide; CHEMBL4097025; 3-[7-(difluoromethyl)-6-(1-methyl-1H-pyrazol-4-yl)-3,4-dihydroquinolin-1(2H)-yl]-N-methyl-1-(oxan-4-yl)-1,4,6,7-tetrahydro-5H-pyrazolo[4,3-c]pyridine-5-carboxamide; GNE-781.
HS Tariff Code
2934.99.03.00
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: Please store this product in a sealed and protected environment (e.g. under nitrogen), avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~100 mg/mL (~190.26 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.87 mg/mL (5.46 mM) (saturation unknown) in 5% DMSO + 40% PEG300 + 5% Tween80 + 50% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: 2.87 mg/mL (5.46 mM) in 5% DMSO + 95% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), suspension solution; with ultrasonication.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 1.67 mg/mL (3.18 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 16.7 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.


Solubility in Formulation 4: ≥ 1.67 mg/mL (3.18 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 16.7 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

Solubility in Formulation 5: ≥ 1.67 mg/mL (3.18 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 16.7 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.9026 mL 9.5131 mL 19.0262 mL
5 mM 0.3805 mL 1.9026 mL 3.8052 mL
10 mM 0.1903 mL 0.9513 mL 1.9026 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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