Fondaparinux sodium

Cat No.:V21240 Purity: ≥98%
Fondaparinux sodium (PENTA; SR-90107A; IC-85158; Arixtra; Xantidar) is a factor Xa inhibitor to form the high affinity binding site for the anti-coagulant factor antithrombin III (ATIII).
Fondaparinux sodium Chemical Structure CAS No.: 114870-03-0
Product category: Factor Xa
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
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10mg
25mg
50mg
100mg
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Purity & Quality Control Documentation

Purity: ≥98%

Product Description

Fondaparinux sodium (PENTA; SR-90107A; IC-85158; Arixtra; Xantidar) is a factor Xa inhibitor to form the high affinity binding site for the anti-coagulant factor antithrombin III (ATIII).

Biological Activity I Assay Protocols (From Reference)
ln Vitro
The first novel anticoagulant that targets factor Xa specifically is fondaparinux sodium. The IC50 value (anti-Xa IU/ml) for fondaparinux is 0.59±0.05 for activated monocytes (ac-M) and 0.17±0.03 for MMPs (monocyte-derived microparticles) [2].
ln Vivo
The pharmacokinetics of fondaparinux sodium are linear and dose-dependent, resulting in a very predictable response. With a quick start of action, a half-life of 14 to 16 hours, and continuous antithrombotic activity for 24 hours, fondaparinux sodium is 100% bioavailable. The medication has no effect on platelet function or aggregation, prothrombin time, or activated partial thromboplastin time [1].
References
[1]. Bauer KA. et al. Fondaparinux sodium: a selective inhibitor of factor Xa. Am J Health Syst Pharm. 2001 Nov 1;58 Suppl 2:S14-7.
[2]. Ben-Hadj-Khalifa S, et al. Differential coagulation inhibitory effect of fondaparinux, enoxaparin and unfractionated heparin in cell models of thrombin generation. Blood Coagul Fibrinolysis. 2011 Jul;22(5):369-73.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C31H43N3NA10O49S8
Molecular Weight
1728.0815
CAS #
114870-03-0
Related CAS #
104993-28-4;114870-03-0 (sodium);
SMILES
S(N([H])[C@@]1([H])[C@@]([H])(O[C@]2([H])[C@]([H])(C(=O)[O-])O[C@]([H])([C@@]([H])([C@@]2([H])O[H])OS(=O)(=O)[O-])O[C@]2([H])[C@@]([H])(C([H])([H])OS(=O)(=O)[O-])O[C@@]([H])([C@@]([H])([C@@]2([H])O[H])N([H])S(=O)(=O)[O-])OC([H])([H])[H])O[C@]([H])(C([H])([H])OS(=O)(=O)[O-])[C@]([H])([C@]1([H])OS(=O)(=O)[O-])O[C@@]1([H])[C@@]([H])([C@]([H])([C@@]([H])([C@@]([H])(C(=O)[O-])O1)O[C@]1([H])[C@@]([H])([C@]([H])([C@@]([H])([C@@]([H])(C([H])([H])OS(=O)(=O)[O-])O1)O[H])O[H])N([H])S(=O)(=O)[O-])O[H])O[H])(=O)(=O)[O-].[Na+].[Na+].[Na+].[Na+].[Na+].[Na+].[Na+].[Na+].[Na+].[Na+]
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
H2O : ~125 mg/mL (~72.33 mM)
Solubility (In Vivo)
Solubility in Formulation 1: 100 mg/mL (57.87 mM) in PBS (add these co-solvents sequentially from left to right, and one by one), clear solution; with sonication.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 0.5787 mL 2.8934 mL 5.7868 mL
5 mM 0.1157 mL 0.5787 mL 1.1574 mL
10 mM 0.0579 mL 0.2893 mL 0.5787 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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