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Duocarmycin SA

Cat No.:V33298 Purity: ≥98%
Duocarmycin SA is an orally bioactive anti-tumor antibiotic with IC50 of 10 pM.
Duocarmycin SA
Duocarmycin SA Chemical Structure CAS No.: 130288-24-3
Product category: New2
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1mg
Other Sizes
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Product Description
Duocarmycin SA is an orally bioactive anti-tumor antibiotic with IC50 of 10 pM. Duocarmycin SA is a very potent cytotoxic agent that induces sequence-selective alkylation of double-stranded DNA. Duocarmycin SA displays synergistic cell toxicity/cytotoxicity against glioblastoma multiforme (GBM) cells treated with proton irradiation in vitro.
Biological Activity I Assay Protocols (From Reference)
ln Vitro
Duocarmycin SA (DSA) (0.1-1 nM; 72 hours) decreases U-138 cell pathway survival in a dose-dependent manner and activates insets and endpoints [2]. Duocarmycin SA (0.1-1 nM; 72 hours) flow chart.
ln Vivo
In CDF1 mice implanted with mouse liver cancer P388, duocarmycin SA (0.143 mg/kg, intraperitoneal injection, single dose) shown anti-tumor efficacy, considerably prolonging carotene in mice by 30% [3]. Mice lacking CDF1 were given a transplant of murine lymphocytic leukemia P388 [3].
Cell Assay
Cell viability assay [1]
Cell Types: U-138 Cell
Tested Concentrations: 0.1, 0.5, 1 nM
Incubation Duration: 72 hrs (hours)
Experimental Results: Produced a significant concentration-dependent decrease in cell viability, and tumor cells were more sensitive to proton radiation [2]. 65% cell viability was observed at 0.1 nM, cell viability stabilized at at least 25% at 0.5 nM, and no increase in cytotoxicity was observed at higher doses. The IC50 of Duocarmycin SA against U-138 MG cells is 0.4 nM. Exhibits strong cytotoxicity with an IC50 of 0.0018 nM (1.8 pM).

Apoptosis analysis [1]
Cell Types: U-138 Cell
Tested Concentrations: 0.001, 0.1 nM
Incubation Duration: 3 or 14 days
Experimental Results: Improved radiosensitivity of U-138 GBM cells by activating apoptosis and necrosis pathways. Survival rates were Dramatically diminished at different proton radiation doses (1-8 Gy).
Animal Protocol
Animal/Disease Models: Murine lymphocytic leukemia P388 transplanted in CDF1 mice [3]
Doses: 0.143 mg/kg
Route of Administration: intraperitoneal (ip) injection (i.p.), single dose
Experimental Results:demonstrated a significant 30% increase in life span.
References

[1]. Synthesis and evaluation of a thio analogue of duocarmycin SA. Bioorg Med Chem Lett. 2009 Dec 15;19(24):6962-5.

[2]. Boyle KE, et.al. Duocarmycin SA, a potent antitumor antibiotic, sensitizes glioblastoma cells to proton radiation. Bioorg Med Chem Lett. 2018 Sep 1;28(16):2688-2692.

[3]. Ichimura M,et.al. Duocarmycin SA, a new antitumor antibiotic from Streptomyces sp. J Antibiot (Tokyo). 1990 Aug;43(8):1037-8.

Additional Infomation
Duocarmycin SA is an indolecarboxamide.
Duocarmycin sa has been reported in Streptomyces with data available.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C25H23N3O7
Molecular Weight
477.46600
Exact Mass
477.154
CAS #
130288-24-3
PubChem CID
115369
Appearance
Off-white to light yellow solid powder
Density
1.53±0.1 g/cm3
Vapour Pressure
8.82E-25mmHg at 25°C
LogP
2.74
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
7
Rotatable Bond Count
6
Heavy Atom Count
35
Complexity
971
Defined Atom Stereocenter Count
2
SMILES
COC1=C(C(=C2C(=C1)C=C(N2)C(=O)N3C[C@H]4C[C@@]45C3=CC(=O)C6=C5C=C(N6)C(=O)OC)OC)OC
InChi Key
VQNATVDKACXKTF-XELLLNAOSA-N
InChi Code
InChI=1S/C25H23N3O7/c1-32-17-6-11-5-14(26-19(11)22(34-3)21(17)33-2)23(30)28-10-12-9-25(12)13-7-15(24(31)35-4)27-20(13)16(29)8-18(25)28/h5-8,12,26-27H,9-10H2,1-4H3/t12-,25-/m1/s1
Chemical Name
methyl (1R,12S)-7-oxo-10-(5,6,7-trimethoxy-1H-indole-2-carbonyl)-5,10-diazatetracyclo[7.4.0.01,12.02,6]trideca-2(6),3,8-triene-4-carboxylate
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: Please store this product in a sealed and protected environment (e.g. under nitrogen), avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~50 mg/mL (~104.72 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 5 mg/mL (10.47 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 50.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 5 mg/mL (10.47 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 50.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.0944 mL 10.4719 mL 20.9437 mL
5 mM 0.4189 mL 2.0944 mL 4.1887 mL
10 mM 0.2094 mL 1.0472 mL 2.0944 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

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What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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