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DMT-2'O-Methyl-rU Phosphoramidite

Cat No.:V43837 Purity: ≥98%
DMT-2'O-Methyl-rU Phosphoramidite (2'-O-Me-U Phosphoramidite) is a 2'-O-Me analogue that may be utilized in the preparation /synthesis of oligonucleotides.
DMT-2'O-Methyl-rU Phosphoramidite
DMT-2'O-Methyl-rU Phosphoramidite Chemical Structure CAS No.: 110764-79-9
Product category: New3
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
DMT-2'O-Methyl-rU Phosphoramidite (2'-O-Me-U Phosphoramidite) is a 2'-O-Me analogue that may be utilized in the preparation /synthesis of oligonucleotides.
DMT-2'O-Methyl-rU Phosphoramidite (CAS: 110764-79-9), also known as 2'-O-Me-U Phosphoramidite, is a 2'-O-methyl modified ribonucleoside phosphoramidite used for oligonucleotide synthesis. The molecular formula is C40H49N4O9P and the molecular weight is 760.82. This compound is a chemically modified ribonucleoside building block designed for incorporation into synthetic oligonucleotides. The 5'-hydroxyl group is protected by a dimethoxytrityl (DMT) group, which is readily cleaved under acidic conditions, while the 3'-position is activated with a phosphoramidite moiety for efficient coupling. The 2'-O-methyl modification enhances the stability and binding affinity of oligonucleotides.
Biological Activity I Assay Protocols (From Reference)
Targets
DMT-2'O-Methyl-rU Phosphoramidite does not have a direct biological target. It is a chemical reagent used in the synthesis of modified oligonucleotides. The 2'-O-methyl modification introduced by this phosphoramidite can enhance the stability and binding affinity of oligonucleotides. The compound is used in the preparation of oligonucleotides for research and therapeutic applications, including antisense and siRNA technologies. Its value is in nucleic acid chemistry.
ln Vitro
DMT-2'O-Methyl-rU Phosphoramidite does not have direct in vitro biological activity. It is a chemical reagent used in oligonucleotide synthesis. Its in vitro activity would be evaluated indirectly through the biological activity of the modified oligonucleotides synthesized using it. The compound itself is not tested in biological assays but is used as a reagent in chemical synthesis.
ln Vivo
DMT-2'O-Methyl-rU Phosphoramidite does not have in vivo biological activity. It is a chemical reagent used in oligonucleotide synthesis. The compound is not intended for administration to animals or humans. Its biological relevance is indirect, through the modified oligonucleotides that are synthesized using it.
Enzyme Assay
In vitro enzyme/receptor binding assays are not applicable to DMT-2'O-Methyl-rU Phosphoramidite as it is a chemical reagent used in oligonucleotide synthesis, not a drug targeting a specific enzyme or receptor. The compound is characterized by chemical analysis methods such as HPLC for purity assessment (typically ≥95%), NMR for structural confirmation, and mass spectrometry. No enzyme or receptor binding studies have been reported.
Cell Assay
Cell culture experiments are not applicable to DMT-2'O-Methyl-rU Phosphoramidite as it is a chemical reagent used in oligonucleotide synthesis, not a pharmacologically active compound. The compound is used in chemical synthesis and is not intended for cell-based assays. Researchers using this compound should focus on its chemical properties and synthetic applications.
Animal Protocol
In vivo animal experiments are not applicable to DMT-2'O-Methyl-rU Phosphoramidite as it is a chemical reagent, not a therapeutic agent. The compound is not intended for administration to animals. Its biological relevance is indirect, through the modified oligonucleotides that are synthesized using it.
ADME/Pharmacokinetics
Pharmacokinetic properties are not applicable to DMT-2'O-Methyl-rU Phosphoramidite as it is a chemical reagent, not a therapeutic agent. The compound has a molecular formula of C40H49N4O9P and a molecular weight of 760.82. It is a solid. Storage: refrigerated (0-10°C), under inert gas.
Toxicity/Toxicokinetics
Safety and toxicology data for DMT-2'O-Methyl-rU Phosphoramidite are limited. As a chemical reagent, it should be handled with appropriate safety precautions. The compound is for research use only and is not for human therapeutic use. Standard laboratory safety practices should be followed. No specific toxicity data are available.
References

[1]. The use of modified primers to eliminate cycle sequencing artifacts. Nucleic Acids Res. 1999 Dec 1;27(23):4642-8.

[2]. Synthesis and characterization of 2'-modified-4'-thioRNA: a comprehensive comparison of nuclease stability. Nucleic Acids Res. 2009 Mar;37(4):1353-62.

Additional Infomation
DMT-2'O-Methyl-rU Phosphoramidite has CAS number 110764-79-9, molecular formula C40H49N4O9P, and molecular weight 760.82. It is a 2'-O-methyl modified ribonucleoside phosphoramidite used for oligonucleotide synthesis. Purity: ≥95%. Not for human use; for research purposes only.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C40H49N4O9P
Molecular Weight
760.8122
Exact Mass
760.324
CAS #
110764-79-9
PubChem CID
10897989
Appearance
White to light yellow solid powder
LogP
6.136
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
11
Rotatable Bond Count
18
Heavy Atom Count
54
Complexity
1240
Defined Atom Stereocenter Count
4
SMILES
CC(C)N(C(C)C)P(OCCC#N)O[C@@H]1[C@H](O[C@H]([C@@H]1OC)N2C=CC(=O)NC2=O)COC(C3=CC=CC=C3)(C4=CC=C(C=C4)OC)C5=CC=C(C=C5)OC
InChi Key
UVUOJOLPNDCIHL-XKZJCBTISA-N
InChi Code
InChI=1S/C40H49N4O9P/c1-27(2)44(28(3)4)54(51-25-11-23-41)53-36-34(52-38(37(36)49-7)43-24-22-35(45)42-39(43)46)26-50-40(29-12-9-8-10-13-29,30-14-18-32(47-5)19-15-30)31-16-20-33(48-6)21-17-31/h8-10,12-22,24,27-28,34,36-38H,11,25-26H2,1-7H3,(H,42,45,46)/t34-,36-,37-,38-,54?/m1/s1
Chemical Name
3-[[(2R,3R,4R,5R)-2-[[bis(4-methoxyphenyl)-phenylmethoxy]methyl]-5-(2,4-dioxopyrimidin-1-yl)-4-methoxyoxolan-3-yl]oxy-[di(propan-2-yl)amino]phosphanyl]oxypropanenitrile
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: This product requires protection from light (avoid light exposure) during transportation and storage.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~100 mg/mL (~131.44 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 1.5 mg/mL (1.97 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 15.0 mg/mL clear DMSO stock solution to 400 μL of PEG300 and mix evenly; then add 50 μL of Tween-80 to the above solution and mix evenly; then add 450 μL of normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 1.5 mg/mL (1.97 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 15.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.3144 mL 6.5719 mL 13.1439 mL
5 mM 0.2629 mL 1.3144 mL 2.6288 mL
10 mM 0.1314 mL 0.6572 mL 1.3144 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

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What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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