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DCC Crosslinker

Cat No.:V19278 Purity: ≥98%
N,N-Dicyclohexylcarbodiimide (DCC) is a biochemical compound that can be used as a biomaterial or organic/chemical reagent for biomedical research.
DCC Crosslinker
DCC Crosslinker Chemical Structure CAS No.: 538-75-0
Product category: New1
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
N,N-Dicyclohexylcarbodiimide (DCC) is a biochemical compound that can be used as a biomaterial or organic/chemical reagent for biomedical research.
Biological Activity I Assay Protocols (From Reference)
Toxicity/Toxicokinetics
Toxicity Data
LC50 (Rat) = 159 mg/m³/6h
800 mg/kg For more complete non-human toxicity data on dicyclohexylcarbodiimide (6 items in total), please visit the HSDB records page.
Additional Infomation
N,n'-Dicyclohexylcarbodiimide is a white crystalline solid with a strong sweet aroma. (NTP, 1992)
1,3-Dicyclohexylcarbodiimide is a carbodiimide compound with cyclohexyl substituents on both nitrogen atoms. It can be used as a peptide coupling agent, ATP synthase inhibitor, and cross-linking agent.
A carbodiimide used as a chemical intermediate and coupling agent in peptide synthesis. (From Holly's Concise Dictionary of Chemistry, 12th Edition)
Mechanism of Action

The molecular mechanism of the neutral organic cation/H+ antitransporter in renal brush border membrane vesicles was studied using the typical organic cation N1-methylnicotinamide. The hydrophobic carbodiimide N,N'-dicyclohexylcarbodiimide (DCCD) has an IC50 of 2.6 μM at pH 7.5 and 40 nM at pH 6.0, and irreversibly inhibits the transport of organic cations. On the other hand, the hydrophilic reagents 1-ethyl-3-[3-(dimethylamino)propyl]carbodiimide and N-ethoxycarbonyl-2-ethoxy-1,2-dihydroquinoline do not affect the transport of organic cations. The substrate does not affect the inactivation rate of DCCD, which follows pseudo-first-order kinetics. The apparent rate constant versus DCCD concentration is linear with a slope of 0.8. The data are consistent with a simple bimolecular reaction mechanism, indicating that one DCCD molecule inactivates one carboxylic acid group in each active transport unit, and that this carboxylic acid group is crucial for transport. The hydrophobic carbodiimide dicyclohexylcarbodiimide (DCCD) has been shown to inhibit the catalytic (C) subunit of adenosine cyclic adenosine monophosphate-dependent protein kinase (EC 2.7.1.3) in a time-dependent, irreversible manner. The inactivation rate is first-order and exhibits saturation kinetics, with an apparent Ki value of 60 μM. Magnesium adenosine 5'-triphosphate (MgATP) resisted this inhibition, while neither the synthetic peptide substrate nor histones provided protection. MgATP alone provided some protection. No inhibition was observed when the catalytic subunit aggregated with the regulatory subunit to form a holoenzyme complex. The inhibition was enhanced at low pH, indicating that the carboxylic acid group is the target of DCCD interaction. Based on the protection experiments, this carboxylic acid group is likely associated with the MgATP binding site, perhaps as a metal ligand. To determine the DCCD modification site, we performed the following experiments: (1) modification with [14C]DCCD; (2) modification with DCCD in the presence of [3H]aniline; (3) modification with DCCD and [14C]glycine ethyl ester. No radioactive incorporation was detected in any of the experiments, indicating that the irreversible inhibition was caused by intramolecular crosslinking between the active carboxylic acid group and the adjacent amino group. Differential peptide mapping identified a peptide that was continuously lost due to DCCD inhibition. This peptide (residues 166-189) contained four carboxylic acid residues and one internal lysine residue.
Dicyclohexylcarbodiimide (DCCD) specifically inhibits the F1F0-H+-ATP synthase complex in E. coli by covalently modifying a protein lipid subunit embedded in the membrane. Multiple copies of the DCCD reactive protein, also known as subunit c, are present in the F1F0 complex. ...
A spontaneous mutant strain of Methanothermobacter thermautotrophicus resistant to the ATP synthase inhibitor N,N'-dicyclohexylcarbodiimide (DCCD) was isolated. DCCD typically inhibits methanogenic electron transport-driven ATP synthesis; however, this DCCD-resistant strain still exhibited methanogenic activity in the presence of 300 μmol/L DCCD. The results indicate that the total ATP synthesis of the mutant strain was higher than that of the wild-type strain regardless of the presence of DCCD. These results suggest that the ATP synthesis system of the mutant strain has been altered. Blue electrophoresis combined with MALDI-TOF/TOF mass spectrometry analysis revealed elevated concentrations of both the A(1) and A(o) subcomplexes of A(1)A(o) ATP synthase in the mutant strain. However, no alterations were found in the structural gene (atp) of A(1)A(o) ATP synthase. These results indicate that DCCD resistance is a consequence of increased expression of A(1)A(o) ATP synthase, suggesting that genes involved in regulating this enzyme expression are responsible for DCCD resistance.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C13H22N2
Molecular Weight
206.3272
Exact Mass
206.178
CAS #
538-75-0
PubChem CID
10868
Appearance
Colorless to off-white <34°C powder,>35°C liquid
Density
1.325
Boiling Point
122-124 ºC (6 torr)
Melting Point
34-35 °C(lit.)
Flash Point
87 ºC
Vapour Pressure
0.0±0.5 mmHg at 25°C
Index of Refraction
1.567
LogP
5.54
Hydrogen Bond Donor Count
0
Hydrogen Bond Acceptor Count
2
Rotatable Bond Count
2
Heavy Atom Count
15
Complexity
201
Defined Atom Stereocenter Count
0
SMILES
N(=C=NC1([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C1([H])[H])C1([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C1([H])[H]
InChi Key
QOSSAOTZNIDXMA-UHFFFAOYSA-N
InChi Code
InChI=1S/C13H22N2/c1-3-7-12(8-4-1)14-11-15-13-9-5-2-6-10-13/h12-13H,1-10H2
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~100 mg/mL (~484.66 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (12.12 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.5 mg/mL (12.12 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 2.5 mg/mL (12.12 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 4.8466 mL 24.2330 mL 48.4660 mL
5 mM 0.9693 mL 4.8466 mL 9.6932 mL
10 mM 0.4847 mL 2.4233 mL 4.8466 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
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  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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