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Darexaban

Cat No.:V10357 Purity: ≥98%
Darexaban (YM150) is a potent, selective and orally bioactive factor Xa (FXa) inhibitor (antagonist) with IC50 of 54.6 nM.
Darexaban
Darexaban Chemical Structure CAS No.: 365462-23-3
Product category: New1
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
Darexaban (YM150) is a potent, selective and orally bioactive factor Xa (FXa) inhibitor (antagonist) with IC50 of 54.6 nM. Darexaban displays high selectivity against other related serine proteases like trypsin, thrombin, and kallikrein. Darexaban has anticoagulant and antithrombotic effects.
Darexaban (CAS# 365462-23-3) is an orally active, direct, and reversible inhibitor of Factor Xa (FXa), an enzyme critical in the coagulation cascade. Its molecular formula is C₂₇H₂₉N₅O₄ and its molecular weight is 487.55 g/mol. Darexaban, also known as YM150, was developed for the prevention and treatment of thrombotic disorders such as deep vein thrombosis, pulmonary embolism, and stroke. It acts by selectively binding to the active site of Factor Xa, inhibiting the conversion of prothrombin to thrombin, thereby reducing thrombin generation and clot formation.
Biological Activity I Assay Protocols (From Reference)
Targets
The primary target of Darexaban is coagulation Factor Xa. It is a competitive, reversible inhibitor that binds to the active site of Factor Xa, preventing its interaction with prothrombin. Factor Xa is a serine protease that plays a pivotal role in the coagulation cascade, as one molecule of Factor Xa can generate many molecules of thrombin. By inhibiting this enzyme, Darexaban attenuates the coagulation process without directly affecting thrombin itself.
ln Vitro
When taken orally, darexaban, an inhibitor of factor Xa (FXa), is quickly and thoroughly metabolized to produce its glucuronide conjugate, YM-222714. In addition to inhibiting prothrombin activation caused by the prothrombinase complex or entire blood clots with potency comparable to that of free FXa, darexaban also specifically and competitively inhibits human FXa [2].
In vitro, Darexaban demonstrates potent inhibition of Factor Xa with an IC₅₀ in the nanomolar range. It exhibits high selectivity for Factor Xa over other serine proteases such as thrombin, trypsin, and plasmin. In human plasma-based assays, it prolongs prothrombin time (PT) and activated partial thromboplastin time (aPTT) in a concentration-dependent manner. Its activity is characterized using chromogenic substrates.
ln Vivo
In mice, Darexaban decreased FXa activity in plasma with an ED50 value of 24.8 mg/kg. Darexaban 3 mg/kg can extend prothrombin time (PT) [2]. In a mouse model of pulmonary thromboembolism (PE), darexaban dosage-dependently reduced mortality, with a substantial impact at a dose of 10 mg/kg [2]. In a mouse model of FeCl3-induced venous thrombosis (VT), Darexaban (0.3-10 mg/kg) dose-dependently reduced thromboprotein content, with significant effects at doses of 3 mg/kg or higher [2].
In vivo, Darexaban has been evaluated in various animal models of thrombosis, including rat and rabbit models of venous and arterial thrombosis. Oral administration resulted in dose-dependent antithrombotic efficacy with an acceptable safety profile. It showed a favorable pharmacokinetic profile with good oral bioavailability and a half-life suitable for once-daily dosing. Clinical trials were conducted, but development was later discontinued.
Enzyme Assay
In vitro enzyme assays for Darexaban measure its inhibition of Factor Xa activity using a chromogenic substrate. The enzyme is incubated with various concentrations of the compound and the substrate, and the rate of chromophore release is monitored spectrophotometrically. IC₅₀ values are determined. Selectivity is assessed by testing against a panel of other serine proteases. These assays are standard for FXa inhibitors.
Cell Assay
In vitro cell-based assays for Darexaban are not typical, as it acts on a plasma protein rather than a cellular target. However, its effects on platelet aggregation can be assessed in platelet-rich plasma by measuring aggregation in response to agonists. The compound's ability to reduce thrombin generation in whole blood or plasma can be measured using thrombin generation assays (calibrated automated thrombography).
Animal Protocol
In vivo animal studies for Darexaban involve models of thrombosis, such as the rat vena cava ligation model or the ferric chloride-induced arterial thrombosis model. The compound is administered orally, and thrombus weight or vessel patency is assessed. Bleeding time is measured as a safety parameter. Pharmacokinetic and pharmacodynamic correlations are established. All procedures follow institutional guidelines.
ADME/Pharmacokinetics
The pharmacokinetic properties of Darexaban include good oral bioavailability in preclinical species, with a half-life of several hours. It is metabolized primarily by CYP3A4 and CYP2J2. The compound is highly protein-bound. Its molecular weight is 487.55 g/mol. Storage is recommended at -20°C. Further PK details are available from published clinical trial data.
Toxicity/Toxicokinetics
The toxicity profile of Darexaban was evaluated in preclinical studies; it showed a dose-dependent increase in bleeding time, which is a common side effect of anticoagulants. No significant organ toxicity was reported at therapeutic doses. However, as with all anticoagulants, there is a risk of hemorrhage. The compound was discontinued in clinical development for strategic reasons.
References

[1]. Discovery of N-[2-hydroxy-6-(4-methoxybenzamido)phenyl]-4- (4-methyl-1,4-diazepan-1-yl)benzamide (darexaban, YM150) as a potent and orally available factor Xa inhibitor. J Med Chem. 2011 Dec 8;54(23):8051-65.

[2]. Darexaban: anticoagulant effects in mice and human plasma in vitro, antithrombotic effects in thrombosis and bleeding models in mice and effects of anti-inhibitor coagulant complex and recombinant factor VIIa. Thromb Res. 2013 May;131(5.

[3]. Theoretical Study of Molecular Structure and Physicochemical Properties of Novel Factor Xa Inhibitors and Dual Factor Xa and Factor IIa Inhibitors. Molecules. 2016 Feb 4;21(2):185.

Additional Infomation
Darexaban has been used in numerous studies, including preventative and basic scientific research, involving Japanese, Caucasian, thromboembolic, pharmacodynamics, and pharmacokinetics. Darexaban is an orally effective inhibitor of coagulation factor Xa (activating factor X) with anticoagulant activity. Darexaban is extensively metabolized in the liver to its active metabolites and excreted via the kidneys and feces.
Additional information: Darexaban is also known as YM150. It was studied in Phase II clinical trials for the prevention of stroke in atrial fibrillation and for venous thromboembolism. Its development was halted, but it remains a research compound for studying Factor Xa inhibition. This product is for research use only and is not approved for clinical or therapeutic applications.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C27H30N4O4
Molecular Weight
474.5515
Exact Mass
474.227
CAS #
365462-23-3
PubChem CID
9912771
Appearance
Off-white to light yellow solid powder
LogP
4.196
Hydrogen Bond Donor Count
3
Hydrogen Bond Acceptor Count
6
Rotatable Bond Count
6
Heavy Atom Count
35
Complexity
691
Defined Atom Stereocenter Count
0
InChi Key
IJNIQYINMSGIPS-UHFFFAOYSA-N
InChi Code
InChI=1S/C27H30N4O4/c1-30-15-4-16-31(18-17-30)21-11-7-19(8-12-21)27(34)29-25-23(5-3-6-24(25)32)28-26(33)20-9-13-22(35-2)14-10-20/h3,5-14,32H,4,15-18H2,1-2H3,(H,28,33)(H,29,34)
Chemical Name
N-[2-hydroxy-6-[(4-methoxybenzoyl)amino]phenyl]-4-(4-methyl-1,4-diazepan-1-yl)benzamide
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~250 mg/mL (~526.81 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.08 mg/mL (4.38 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 20.8 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.08 mg/mL (4.38 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 20.8 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 2.08 mg/mL (4.38 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 20.8 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.1073 mL 10.5363 mL 21.0726 mL
5 mM 0.4215 mL 2.1073 mL 4.2145 mL
10 mM 0.2107 mL 1.0536 mL 2.1073 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Clinical Trial Information
NCT Number Recruitment interventions Conditions Sponsor/Collaborators Start Date Phases
NCT01405989 Completed Drug: darexaban
Drug: ketoconazole
Pharmacokinetics of Darexaban and
Metabolites
Astellas Pharma Inc January 2010 Phase 1
NCT01406002 Completed Drug: darexaban
Drug: Rifampicin
Pharmacokinetics of Darexaban and
Metabolites
Astellas Pharma Inc January 2010 Phase 1
NCT01514825 Completed Drug: YM150
Drug: Placebo
Healthy Elderly Subject
Pharmacokinetic of YM150
Astellas Pharma Inc November 2006 Phase 1
NCT01424332 Completed Drug: Darexaban
Drug: Acetyl Salicylic Acid (ASA)
Pharmacodynamic and Pharmacokinetic
Interaction
Astellas Pharma Inc December 2007 Phase 1
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