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Daminozide

Alias: DIMG; B 995; Aminozide
Cat No.:V19151 Purity: ≥98%
Daminozide is a plant growth regulator and a selective inhibitor of human KDM2/7 histone demethylase, with IC50s of 0.55, 1.5 and 2.1 μM for PHF8, KDM2A and KIAA1718 respectively.
Daminozide
Daminozide Chemical Structure CAS No.: 1596-84-5
Product category: New1
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1g
5g
Other Sizes
Official Supplier of:
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Product Description
Daminozide is a plant growth regulator and a selective inhibitor of human KDM2/7 histone demethylase, with IC50s of 0.55, 1.5 and 2.1 μM for PHF8, KDM2A and KIAA1718 respectively. Daminozide is >100-fold selective for the KDM2/7 subfamily compared to other demethylase subfamily members tested.
Biological Activity I Assay Protocols (From Reference)
ln Vitro
Compared to other demethylase subfamily members examined (IC50=127 μM for KDM3A, or higher for other demethylases), dacazine is >100-fold more selective for the KDM2/7 subfamily [1].
ln Vivo
The model organism Drosophila melanogaster is teratogenic and genotoxic when exposed to doses of 200–20,000 ppm of dinonozide [2].
ADME/Pharmacokinetics
Absorption, Distribution and Excretion
Daminozide has been studied in minipigs chosen because of the similar stomach conditions to the human. They were given oral doses of radio-labelled test material at 5 mg/kg bw. It was found to be rapidly excreted with approximately 60% excreted by 48 hours. The metabolite (UDMH) was found in urine at up to 2.8 ppm; lesser amounts were found in the feces. Radio-labelled 1,1-dimethylnitrosamine at levels of 0.69 ppm... were also found in the urine of the test animals. A second study was performed with a dermal application of radio-labelled daminozide covering dermal surfaces with concentrations of 0.5, 0.05, or 0.005 mg/cu cm for periods up to 24 hours. As much as 1.8% of the dose was absorbed and excreted by the test animals in 24 hours.
Distribution and metabolic fate of (14)C daminozide in Silver maple and American sycamore seedlings were studied by auto radiography. Radioactivity was detected in all parts of plant. (14)C concentrated in meristematic regions of leaves.
Analysis of extracts from red oak (Quercus rubra) administered (14)C-labeled maleic hydrazide or daminozide indicated that both growth inhibitors were distributed acropetally as well as basipetally over a 22 day period.
When leaves of 3 yr old apple trees, CV Cox's orange pippin, were painted with (14)C-labeled daminozide, over half of radioactivity accumulated in fruits.
Metabolism / Metabolites
Metabolites /in plants/ include 1,1-dimethylhydrazine.
Toxicity/Toxicokinetics
Toxicity Data
LC50 (rat) > 147,000 mg/m3/1h
Non-Human Toxicity Values
LD50 Rat oral 8,400 mg/kg
LD50 Rabbit percutaneous > 5000 mg/kg
LD50 Mouse oral 6300 mg/kg
LD50 Mouse ip 1325 mg/kg
LC50 Rat inhalation >20 mg/L/hr
References

[1]. Rose NR, Woon EC, Tumber A, Plant growth regulator daminozide is a selective inhibitor of human KDM2/7 histone demethylases. J Med Chem. 2012 Jul 26;55(14):6639-43.

[2]. Exploration of teratogenic and genotoxic effects of fruit ripening retardant Alar (Daminozide) on model organism Drosophila melanogaster. Interdiscip Toxicol. 2018 May;11(1):27-37.

Additional Infomation
Daminozide can cause cancer according to The Environmental Protection Agency (EPA).
Succinic acid 2,2-dimethylhydrazide appears as odorless white crystals or powder. (NTP, 1992)
Daminozide is a straight-chain fatty acid.
Daminozide — also known as Alar, Kylar, B-NINE, DMASA, SADH, or B 995 — is a plant growth regulator, a chemical sprayed on fruit to regulate their growth, make their harvest easier, and keep apples from falling off the trees before they are ripe. This makes sure they are red and firm for storage. Alar was first approved for use in the U.S. in 1963, it was primarily used on apples until 1989 when it was voluntarily withdrawn by the manufacturer after the U.S. Environmental Protection Agency proposed banning it based on unacceptably high cancer risks to consumers.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C6H12N2O3
Molecular Weight
160.173
Exact Mass
160.084
CAS #
1596-84-5
PubChem CID
15331
Appearance
White to off-white solid powder
Density
1.2±0.1 g/cm3
Boiling Point
329.5±44.0 °C at 760 mmHg
Melting Point
162-164 °C(lit.)
Flash Point
153.1±28.4 °C
Vapour Pressure
0.0±1.6 mmHg at 25°C
Index of Refraction
1.497
LogP
-0.5
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
4
Rotatable Bond Count
4
Heavy Atom Count
11
Complexity
156
Defined Atom Stereocenter Count
0
InChi Key
NOQGZXFMHARMLW-UHFFFAOYSA-N
InChi Code
InChI=1S/C6H12N2O3/c1-8(2)7-5(9)3-4-6(10)11/h3-4H2,1-2H3,(H,7,9)(H,10,11)
Chemical Name
4-(2,2-dimethylhydrazinyl)-4-oxobutanoic acid
Synonyms
DIMG; B 995; Aminozide
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~106.67 mg/mL (~665.98 mM)
H2O : ~100 mg/mL (~624.34 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (15.61 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.5 mg/mL (15.61 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 2.5 mg/mL (15.61 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


Solubility in Formulation 4: 100 mg/mL (624.34 mM) in PBS (add these co-solvents sequentially from left to right, and one by one), clear solution; with ultrasonication (<60°C).

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 6.2434 mL 31.2168 mL 62.4337 mL
5 mM 1.2487 mL 6.2434 mL 12.4867 mL
10 mM 0.6243 mL 3.1217 mL 6.2434 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Biological Data
  • Heatmap of JmjC demethylase inhibition by a set of 2OG analogues Daminozide 19 is selective for KDM2A. Tricarboxylic acid cycle intermediates succinate 1 and fumarate 2 were generally poor demethylase inhibitors, though KDM4E7 was an exception to this trend. (R)- and (S)-2-hydroxyglutarate enantiomers, produced by gain-of-function mutations to isocitrate dehydrogenase were inhibitors of the KDM2, KDM3 and KDM4 histone demethylases.12 The catechols 16 and 17, bipyridyl 18 and 8-hydroxyquinoline 21 inhibited all demethylases screened. By contrast, 5 most potently inhibited PHD2 (prolyl hydroxylase domain enzyme isoform 2). Each compound was screened in an AlphaScreen assay and is represented as % inhibition of the enzyme at 20 μM compound. J Med Chem . 2012 Jul 26;55(14):6639-43.
  • Crystal structures reveal the mode of inhibition of the KDM2/7 subfamily by daminozide PHF8 (with Zn(II) substituting for Fe(II),) and KDM4A (with Ni(II) substituting for Fe(II)) and FIH (with Zn(II) substituting for Fe(II)) (Table S3). Daminozide binds the metal through its hydrazide amine lone pair and carbonyl oxygen. Two distinct orientations of daminozide are observed in the two KDM4A molecules in the asymmetric unit; both are shown (see Table S2 for electron density maps). Selectivity of daminozide for the KDM2/7 subfamily may arise because they possess a hydrophobic region (Tyr257, Val255 and Ile313) into which the two daminozide methyl groups may bind. In contrast, the equivalent regions of KDM4A, FIH and the other tested demethylases/oxygenases are more hydrophilic. J Med Chem . 2012 Jul 26;55(14):6639-43.
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