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Cysteine thiol probe

Cat No.:V40632 Purity: ≥98%
Cysteine Thiol Probe is a thiol-based probe designed to label electrophilic naturally occurring compounds.
Cysteine thiol probe
Cysteine thiol probe Chemical Structure CAS No.: 1947408-74-3
Product category: New2
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
Cysteine Thiol Probe is a thiol-based probe designed to label electrophilic naturally occurring compounds. The Cysteine Thiol Probe has every characteristic of an ideal pharmacophore probe and has a chromophore. Cysteine Thiol Probe is able to bind electrophilic metabolites based on ketenes, beta-lactams and beta-lactones.
Cysteine thiol probe (CAS#: 1947408-74-3) is a chemoselective thiol-based probe designed to label electrophilic naturally occurring compounds. It possesses each of the characteristics of an ideal pharmacophore probe and has a chromophore. The probe is capable of engaging enone-, ketene-, β-lactam-, and β-lactone-based electrophilic metabolites. It reacts much more readily with β-lactam- and β-lactone-based electrophilic natural products, while its reactivity with epoxide-based electrophilic natural products is poor.
Biological Activity I Assay Protocols (From Reference)
Targets
The Cysteine thiol probe targets free thiol groups in cysteine residues of proteins and peptides. By targeting the reactive sulfhydryl (-SH) group, this probe enables sensitive monitoring of redox states, post-translational modifications, and protein folding dynamics. The probe is designed to label electrophilic metabolites, enabling the detection and identification of reactive natural products. It does not have a classical pharmacological target but serves as a chemical biology tool.
ln Vitro
When it comes to β-lactam and β-lactone-based electrophilic natural products, the cysteine thiol probe (probe 1) responds more easily, whereas it reacts less quickly with epoxide-based electrophilic natural products. Probe 2 reacts with natural compounds containing epoxides substantially more quickly. Their simultaneous usage in extracts is made possible by their orthogonal reactivity. The isotopic pattern of the tagged natural product indicates the structural origin of the product because probe 2 is chlorinated and the cysteine thiol probe is brominated. Competition studies with the cysteine thiol probe and 2 revealed that the chlorinated probe 2 reacts alone with the epoxide in salt amide A, while the brominated cysteine thiol probe only reacts with the β-lactam in penicillin G and the β-lactone in salinosporamide A [1].
In vitro, the Cysteine thiol probe functions as a chemoselective tool for detecting and labeling electrophilic metabolites. It reacts much more readily with β-lactam- and β-lactone-based electrophilic natural products, while its reactivity with epoxide-based electrophilic natural products is poor. The probe possesses a chromophore, enabling detection by spectroscopic methods. Its activity is typically evaluated by monitoring the formation of labeled products using HPLC, LC-MS, or spectrophotometric methods.
ln Vivo
In vivo, the Cysteine thiol probe is used as a chemical biology tool to study the reactivity of electrophilic metabolites in biological systems. It can be used to label and track electrophilic natural products in complex biological matrices. However, specific in vivo applications and efficacy data are not extensively detailed in the available literature, as the compound is primarily used as a research probe in biochemical and analytical applications. Further studies are needed to fully characterize its in vivo utility.
Enzyme Assay
Cell-free assays for the Cysteine thiol probe involve evaluating its reactivity with various electrophilic metabolites. The probe is incubated with model electrophilic compounds (β-lactams, β-lactones, enones, ketenes, epoxides) in buffered solutions. The formation of labeled products is monitored by HPLC, LC-MS, or spectrophotometric methods. Reaction kinetics and selectivity are assessed by comparing the reactivity of the probe with different classes of electrophilic compounds. The probe's chromophore enables detection by UV-visible spectroscopy.
Cell Assay
In vitro cellular assays for the Cysteine thiol probe typically involve treating cells or cell lysates with the probe to label electrophilic metabolites. Cells are incubated with the probe for defined periods. Labeled metabolites are extracted and analyzed by HPLC or LC-MS. The probe's ability to detect and identify electrophilic natural products in complex biological samples is assessed. Cellular uptake and labeling efficiency are evaluated. Cytotoxicity is assessed to ensure that the probe is well-tolerated at effective concentrations.
Animal Protocol
In vivo animal studies for the Cysteine thiol probe are limited, as the compound is primarily used as a research probe in biochemical and analytical applications. The probe may be administered to animals to study the reactivity of electrophilic metabolites in vivo. Tissue samples are collected and analyzed for labeled metabolites. However, specific dosing regimens and experimental protocols are not extensively documented in the available literature. The probe is intended for research use only.
ADME/Pharmacokinetics
Pharmacokinetic properties of the Cysteine thiol probe include a molecular weight of 318.17 g/mol (approximate) and molecular formula C11H12BrNO3S (approximate). The compound has a purity of ≥95%. As a chemical probe, its pharmacokinetic properties are not the primary focus of study. The compound is typically stored at appropriate conditions as a research reagent. Detailed ADME parameters are not extensively reported in the available literature.
Toxicity/Toxicokinetics
The toxicity profile of the Cysteine thiol probe has not been extensively characterized in published literature. As a chemical probe, it is intended for research use at carefully controlled concentrations. Standard safety precautions should be followed when handling this compound, including the use of personal protective equipment. The compound is intended for research use only and not for therapeutic applications in humans.
References

[1]. Thiol Probes To Detect Electrophilic Natural Products Based on Their Mechanism of Action. ACS Chem Biol. 2016 Aug 19;11(8):2328-36.

[2]. Thiol-Based Probe for Electrophilic Natural Products Reveals That Most of the Ammosamides Are Artifacts. J Nat Prod. 2017 Jan 27;80(1):126-133.

Additional Infomation
The Cysteine thiol probe is a chemoselective thiol-based probe designed to label electrophilic natural products. It reacts with β-lactam-, β-lactone-, enone-, and ketene-based electrophilic metabolites and possesses a chromophore for detection. The probe is used to detect and identify reactive electrophilic metabolites in complex biological samples. It is a research tool for chemical biology and metabolomics studies.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C11H12BRNO3S
Molecular Weight
318.186881065369
Exact Mass
316.972
CAS #
1947408-74-3
PubChem CID
145925689
Appearance
White to off-white solid powder
LogP
2.1
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
4
Rotatable Bond Count
5
Heavy Atom Count
17
Complexity
280
Defined Atom Stereocenter Count
1
SMILES
COC(=O)[C@H](CS)NC(=O)C1=CC=C(C=C1)Br
InChi Key
QLAHQHTYCQKQLI-VIFPVBQESA-N
InChi Code
InChI=1S/C11H12BrNO3S/c1-16-11(15)9(6-17)13-10(14)7-2-4-8(12)5-3-7/h2-5,9,17H,6H2,1H3,(H,13,14)/t9-/m0/s1
Chemical Name
methyl (2R)-2-[(4-bromobenzoyl)amino]-3-sulfanylpropanoate
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~250 mg/mL (~785.69 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.08 mg/mL (6.54 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 20.8 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.08 mg/mL (6.54 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 20.8 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.1428 mL 15.7139 mL 31.4278 mL
5 mM 0.6286 mL 3.1428 mL 6.2856 mL
10 mM 0.3143 mL 1.5714 mL 3.1428 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
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  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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