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CY2-SE

Cat No.:V32120 Purity: ≥98%
Cy2-SE iodine is a CY dye.
CY2-SE
CY2-SE Chemical Structure CAS No.: 186205-33-4
Product category: New2
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
5mg
10mg
Other Sizes
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Product Description
Cy2-SE iodine is a CY dye. CY is the abbreviation of Cyanine, which is a compound composed of two nitrogen atoms connected by an odd number of methyl units. Cyanine compounds have the characteristics of long wavelength, adjustable absorption and emission, high extinction coefficient, good water solubility, and relatively simple synthesis. CY dyes are often used for labeling proteins, antibodies and small molecule compounds. For labeling protein antibodies, the binding can be completed through a simple mixing reaction. Below we introduce the labeling method for protein antibody labeling, which has certain reference significance. .
Biological Activity I Assay Protocols (From Reference)
ln Vitro
Plan 1. Optimal protein preparation: 1) Please prepare the protein (antibody) concentration to 2 mg/mL in order to acquire the labeling effect. 2) The protein solution has a pH of 8.5±0.5. 3) 1M protein should be utilized if the pH is less than 8.0. If the protein concentration is less than 2 mg/mL, the labeling efficiency will be significantly decreased. The range of suggested final protein concentration is 2–10 mg/mL for best labeling efficiency. 4) Birmingham 2 must be transparent for the protein. Preparation of the dye (using CY3-NHS ester as an example): Pour 10 3 of anhydrous DMSO into the CY3-NHS ester vial. The amount of dye (CY3-NHS ester) needed for the reaction is determined by the ideal molar ratio of CY3-NHS to protein as well as the amount of labeled protein. Example: Dissolve 1 mg of CY3-NHS ester in 100 μL of DMSO, assuming that the required labeled protein is 500 μL of 2 mg/mL IgG (MW=150,000). This yields the necessary volume of CY3-NHS ester, which is 5.05 μL. The steps involved in the calculation are as follows: 1) mmol (IgG) = mg/mL (IgG) × mL (IgG)/MW (IgG) = 2 mg/mL × 0.5 mL/150, 000 mg/mmol = 6.7×10 -6 mmol 2) mmol (CY3-NHS ester) = mmol (IgG) × 10=6.7×10-6 mmol×10=6.7 × 10-5 mmol 3) uL (CY3-NHS ester) = mmol (CY3-NHS ester)ester) ×MW (CY3-NHS ester)/mg/μL (CY3-NHS ester) =6.7 ×10-5 mmol ×753.88 mg/mmol/0.01 mg/μL=5.05 μL (CY3-NHS ester) 4. Execute the coupling reaction 1: Gradually incorporate the recently synthesized 10 mg/mL CY3-NHS ester into the 0.5 mL protein sample solution, give it a gentle shake to combine, quickly centrifuge, and retrieve the sample from the bottom of the reaction tube. 2) For the following sixty minutes, gently flip the reaction tube while keeping it in a dark location. Reverse reaction 5 gradually after ten to fifteen minutes. Conjugates: Using a SepHadex G-25 column, the following methodology demonstrates how to block a dye-conjugate. 1) Assemble the SepHadex G-25 column in accordance with the manufacturer's guidelines. 2) Fill the SepHadex G-25 column with the reaction mixture (from the "Run conjugation reaction"). 3) Add PBS (pH 7.2–7.4) as soon as the sample is running below the top resin surface. 4) To complete column extrusion, add extra PBS (pH 7.2–7.4) to the appropriate sample. Mix the fractions that have the desired conjugate material of dye and protein.
References

[1]. Ptaszek M. Rational design of fluorophores for in vivo applications. Prog Mol Biol Transl Sci. 2013;113:59-108.

[2]. Shindy, H. A. (2017). Fundamentals in the chemistry of cyanine dyes: A review. Dyes and Pigments, 145, 505–513. doi:10.1016/j.dyepig.2017.06.029.

These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C29H30IN3O6
Molecular Weight
643.469480037689
Exact Mass
643.117
CAS #
186205-33-4
PubChem CID
121596142
Appearance
Orange to red solid powder
Hydrogen Bond Donor Count
0
Hydrogen Bond Acceptor Count
8
Rotatable Bond Count
11
Heavy Atom Count
39
Complexity
919
Defined Atom Stereocenter Count
0
SMILES
CCN\1C2=CC=CC=C2O/C1=C\C=C\C3=[N+](C4=CC=CC=C4O3)CCCCCC(=O)ON5C(=O)CCC5=O.[I-]
InChi Key
RQYPAAVMQSMNBY-UHFFFAOYSA-M
InChi Code
InChI=1S/C29H30N3O6.HI/c1-2-30-21-11-5-7-13-23(21)36-27(30)15-10-16-28-31(22-12-6-8-14-24(22)37-28)20-9-3-4-17-29(35)38-32-25(33)18-19-26(32)34;/h5-8,10-16H,2-4,9,17-20H2,1H3;1H/q+1;/p-1
Chemical Name
(2,5-dioxopyrrolidin-1-yl) 6-[2-[(E,3Z)-3-(3-ethyl-1,3-benzoxazol-2-ylidene)prop-1-enyl]-1,3-benzoxazol-3-ium-3-yl]hexanoate;iodide
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: Please store this product in a sealed and protected environment (e.g. under nitrogen), avoid exposure to moisture and light.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~62.5 mg/mL (~97.13 mM)
Solubility (In Vivo)
Solubility in Formulation 1: 3.13 mg/mL (4.86 mM) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), suspension solution; with sonication.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 31.3 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.5541 mL 7.7704 mL 15.5407 mL
5 mM 0.3108 mL 1.5541 mL 3.1081 mL
10 mM 0.1554 mL 0.7770 mL 1.5541 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

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What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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