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Clitocine

Cat No.:V18490 Purity: ≥98%
Clitocine is a novel and potent readthrough agent withanticancer activity.
Clitocine
Clitocine Chemical Structure CAS No.: 105798-74-1
Product category: New1
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1mg
5mg
10mg
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Product Description
Clitocine is a novel and potent readthrough agent with anticancer activity. Clitocine is an adenosine nucleoside analog isolated from mushroom, and can induce the production of p53 protein in cells harboring p53 nonsense-mutated alleles. Also acts as a suppressor of nonsense mutations.
Clitocine is a naturally occurring nucleoside analog that possesses antitumor activity. It is a potent and efficacious readthrough agent. Clitocine acts as a suppressor of nonsense mutations and can induce the production of p53 protein in cells harboring p53 nonsense-mutated alleles. It can induce apoptosis in multidrug-resistant human cancer cells by targeting Mcl-1. It is an adenosine nucleoside analog isolated from mushroom. It has a molecular formula of C11H14N4O4 and a molecular weight of 266.25.
Biological Activity I Assay Protocols (From Reference)
Targets
Clitocine targets Mcl-1, an anti-apoptotic protein, and the production of p53 protein. It acts as a readthrough agent, suppressing nonsense mutations. By targeting Mcl-1, it induces apoptosis in multidrug-resistant cancer cells. It also induces the production of p53 protein in cells with p53 nonsense-mutated alleles.
ln Vitro
Premature stop codon readthrough activity requires clitocine incorporation into mRNA, and vigorous readthrough can be achieved simply by having clitocine at the third position of a premature stop codon[1]. For a duration of 24 hours, claudocine (0-0.8 μM) increases TRAIL-Lethality in LS411N and SW620 cells. TRAIL-mediated apoptosis is greatly enhanced by cletocine (0.2μM; 36 hours)[2].
In vitro, Clitocine is a potent and efficacious readthrough agent. It can induce the production of p53 protein in cells harboring p53 nonsense-mutated alleles. It induces apoptosis in multidrug-resistant human cancer cells by targeting Mcl-1. It weakly inhibits adenosine kinase (Ki=3 μM).
ln Vivo
In a xenograft model, citocine (0.3-3 mg/kg; sc; five times per week)-induced p53 suppresses the formation of CAOV-33p53-UAA136 tumors[1].
In vivo activity data for Clitocine is limited. As a potent readthrough agent and anticancer compound, it is expected to have antitumor effects in animal models. Its ability to induce p53 production and target Mcl-1 suggests potential for treating cancers with p53 mutations or multidrug resistance.
Enzyme Assay
Clitocine is evaluated in cell-free assays to measure its inhibition of adenosine kinase. The compound is incubated with adenosine kinase and a substrate, and the inhibition of enzyme activity is measured. Ki values are determined to quantify the potency of inhibition.
Cell Assay
Clitocine is assessed in cell-based assays using cancer cell lines with p53 nonsense mutations. Cells are treated with Clitocine, and p53 protein production and apoptosis are measured. Its effects on Mcl-1 expression and cell viability are evaluated.
Animal Protocol
Animal/Disease Models: nu/nu (nude) mice (CAOV-3p53-UAA136 xenograft tumors )[1]
Doses: 0.3, 3 mg/kg (or 20 mg/kg once per week)
Route of Administration: Sc; five times per week
Experimental Results: CAOV-33p53-UAA136 tumor growth was inhibited.
Clitocine is administered in animal models to evaluate its antitumor efficacy. However, specific animal study protocols are not extensively documented. It is typically formulated for in vivo administration using DMSO or other suitable vehicles.
ADME/Pharmacokinetics
Clitocine has a molecular weight of 266.25 and a molecular formula of C11H14N4O4. It has a CAS number of 105798-74-1. The compound is a naturally occurring nucleoside analog. It should be stored under recommended conditions.
Toxicity/Toxicokinetics
No detailed toxicity data is available for Clitocine. The compound is for research use only and is not intended for human therapeutic use. It is a natural product and is generally considered safe for research purposes.
References

[1]. The nucleoside analog clitocine is a potent and efficacious readthrough agent. RNA. 2017;23(4):567-577.

[2]. Clitocine potentiates TRAIL-mediated apoptosis in human colon cancer cells by promoting Mcl-1 degradation. Apoptosis. 2016;21(10):1144-1157.

Additional Infomation
Clitocine is an N-glycoside compound. It has been reported that litocin has been found in Paralepista flaccida and Leucopaxillus giganteus, and relevant data are available.
Clitocine is also known as 7-Deazaadenosine and NSC-340113. It is an adenosine nucleoside analog isolated from mushroom. The compound is not approved for clinical use.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C9H13N5O6
Molecular Weight
287.22942
Exact Mass
287.087
CAS #
105798-74-1
PubChem CID
129111
Appearance
White to off-white solid powder
Density
1.82g/cm3
Boiling Point
702.4ºC at 760 mmHg
Flash Point
378.6ºC
Vapour Pressure
1.04E-20mmHg at 25°C
Index of Refraction
1.771
LogP
-0.4
Hydrogen Bond Donor Count
5
Hydrogen Bond Acceptor Count
10
Rotatable Bond Count
3
Heavy Atom Count
20
Complexity
354
Defined Atom Stereocenter Count
4
SMILES
C1=NC(=C(C(=N1)N[C@H]2[C@@H]([C@@H]([C@H](O2)CO)O)O)[N+](=O)[O-])N
InChi Key
OHEMBWZZEKCBAS-UUOKFMHZSA-N
InChi Code
InChI=1S/C9H13N5O6/c10-7-4(14(18)19)8(12-2-11-7)13-9-6(17)5(16)3(1-15)20-9/h2-3,5-6,9,15-17H,1H2,(H3,10,11,12,13)/t3-,5-,6-,9-/m1/s1
Chemical Name
(2R,3R,4S,5R)-2-[(6-amino-5-nitropyrimidin-4-yl)amino]-5-(hydroxymethyl)oxolane-3,4-diol
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~100 mg/mL (~348.15 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.08 mg/mL (7.24 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 20.8 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.08 mg/mL (7.24 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 20.8 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 2.08 mg/mL (7.24 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 20.8 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.4815 mL 17.4077 mL 34.8153 mL
5 mM 0.6963 mL 3.4815 mL 6.9631 mL
10 mM 0.3482 mL 1.7408 mL 3.4815 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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