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CG-400549

Alias: CG400549; CG 400549; CG-400549
Cat No.:V17983 Purity: ≥98%
Nilofabicin is a FabI inhibitor.
CG-400549
CG-400549 Chemical Structure CAS No.: 934628-27-0
Product category: New1
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
Nilofabicin is a FabI inhibitor. Nilofabicin has MIC (90) of 0.5 microg/ml against Staphylococcus aureus and is more effective than nilofabicin or vancomycin.
Nilofabicin (CG-400549) is a potent inhibitor of enoyl-(acyl-carrier protein) reductase (FabI), a key enzyme in bacterial fatty acid biosynthesis. It is used in studies for the treatment of complicated acute bacterial infections. Nilofabicin has an MIC₉₀ of 0.5 μg/mL against Staphylococcus aureus strains and is more potent than either linezolid or vancomycin. The compound has a molecular weight of 340.44 and molecular formula C₁₉H₂₀N₂O₂S.
Biological Activity I Assay Protocols (From Reference)
Targets
Nilofabicin targets FabI (enoyl-ACP reductase), an essential enzyme in the bacterial fatty acid synthesis (FAS II) pathway. FabI catalyzes the final step of each elongation cycle in fatty acid biosynthesis, reducing enoyl-ACP to acyl-ACP. Inhibition of FabI disrupts bacterial cell membrane synthesis, leading to bactericidal activity. Nilofabicin is selective for bacterial FabI and has no significant activity against mammalian fatty acid synthase.
ln Vitro
In vitro, nilofabicin demonstrates potent antibacterial activity against Staphylococcus aureus with an MIC₉₀ of 0.5 μg/mL. It is more effective than linezolid or vancomycin against S. aureus strains. The compound is soluble in DMSO at 100 mg/mL (293.74 mM). It is a solid, white to off-white in color. Specific EC₅₀ values and activity against other bacterial species are documented in the literature.
ln Vivo
Nilofabicin has been evaluated in clinical trials for the treatment of skin infections. In vivo efficacy has been demonstrated in animal models of bacterial infection. The compound's potent activity against S. aureus, including methicillin-resistant strains, makes it a promising candidate for treating complicated acute bacterial infections. Further clinical development would be required to establish its full therapeutic potential.
Enzyme Assay
FabI enzyme inhibition assays are performed using purified enoyl-ACP reductase enzyme and appropriate substrates. Enzyme activity is measured spectrophotometrically by monitoring the oxidation of NADH or NADPH. Nilofabicin is tested at various concentrations, and IC₅₀ values are calculated from dose-response curves. The compound's binding affinity for FabI can be determined using surface plasmon resonance or isothermal titration calorimetry.
Cell Assay
In vitro antibacterial susceptibility testing is performed using broth microdilution or agar dilution methods following CLSI guidelines. S. aureus strains are cultured in Mueller-Hinton broth at 35°C. Nilofabicin is tested at serial two-fold dilutions, and MIC values are determined after 18-24 hours of incubation. The compound is dissolved in DMSO for stock solutions and diluted in culture media. MTT assays may be used to assess bacterial viability.
Animal Protocol
In vivo efficacy is evaluated in murine models of S. aureus infection, including skin and soft tissue infection models. Nilofabicin is administered intraperitoneally or orally at various doses. Endpoints include survival rates, bacterial load in tissues (CFU counts), and histopathological assessment of infection sites. Pharmacokinetic studies are conducted to determine plasma concentrations and tissue distribution.
ADME/Pharmacokinetics
Nilofabicin (CG-400549) has a molecular weight of 340.44 and molecular formula C₁₉H₂₀N₂O₂S with CAS number 934628-27-0. It is a solid, white to off-white in color. The compound should be stored at 4°C, protected from light. In solvent, it can be stored at -80°C for 6 months or -20°C for 1 month. It is soluble in DMSO at 100 mg/mL. Specific pharmacokinetic parameters are documented in the literature from clinical and preclinical studies.
Toxicity/Toxicokinetics
Specific toxicity data for nilofabicin are documented in preclinical and clinical studies. As an antibacterial agent, its safety profile has been evaluated in clinical trials for skin infections. Common adverse effects associated with FabI inhibitors may include gastrointestinal disturbances and injection site reactions. Further toxicity characterization would be required for full clinical development. Standard laboratory safety precautions should be followed when handling this compound.
Additional Infomation
CG400549 has been used in trials investigating the treatment of skin infections.
Nilofabicin (CG-400549) is a FabI inhibitor with potent activity against Staphylococcus aureus, including methicillin-resistant strains. It has been investigated in clinical trials for the treatment of skin infections. The compound represents a promising new class of antibacterial agents targeting bacterial fatty acid biosynthesis, which is distinct from clinically used antibiotics. Its development addresses the need for new antibiotics to combat drug-resistant bacterial infections. It is commercially available for research purposes only.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C19H20N2O2S
Molecular Weight
340.441
Exact Mass
340.125
CAS #
934628-27-0
PubChem CID
11844916
Appearance
White to off-white solid powder
Density
1.273 g/cm3
Boiling Point
607.121ºC at 760 mmHg
Flash Point
320.975ºC
LogP
4.051
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
4
Rotatable Bond Count
6
Heavy Atom Count
24
Complexity
506
Defined Atom Stereocenter Count
0
SMILES
O=C1N(CC2C(C)=C(N)C=CC=2)C=CC(OCCC2=CC=CS2)=C1
InChi Key
YCLREGRRHGLOAK-UHFFFAOYSA-N
InChi Code
InChI=1S/C19H20N2O2S/c1-14-15(4-2-6-18(14)20)13-21-9-7-16(12-19(21)22)23-10-8-17-5-3-11-24-17/h2-7,9,11-12H,8,10,13,20H2,1H3
Chemical Name
1-[(3-amino-2-methylphenyl)methyl]-4-(2-thiophen-2-ylethoxy)pyridin-2-one
Synonyms
CG400549; CG 400549; CG-400549
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: This product requires protection from light (avoid light exposure) during transportation and storage.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~100 mg/mL (~293.74 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (7.34 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.5 mg/mL (7.34 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 2.5 mg/mL (7.34 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.9374 mL 14.6869 mL 29.3738 mL
5 mM 0.5875 mL 2.9374 mL 5.8748 mL
10 mM 0.2937 mL 1.4687 mL 2.9374 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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