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CDE-096

Alias: CDE096; CDE 096; CDE-096
Cat No.:V17769 Purity: ≥98%
CDE-096 is a potent PAI-1 inhibitor.
CDE-096
CDE-096 Chemical Structure CAS No.: 1228357-04-7
Product category: New1
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
CDE-096 is a potent PAI-1 inhibitor. CDE-096 prevents PAI-1 from inactivating tPA and uPA with similar potency (IC50=30 and 25 nM, respectively) and has activivty against glycosylated PAI-1 as well as PAI-1 developed from several species ( IC50=19, 22 and 18 nM for mouse, rat and porcine PAI-1 respectively).
CDE-096 is a potent inhibitor of plasminogen activator inhibitor-1 (PAI-1). It prevents PAI-1 from inactivating tissue plasminogen activator (tPA) and urokinase plasminogen activator (uPA) with comparable potency (IC50 = 30 nM and 25 nM, respectively). CDE-096 also shows activity against glycosylated PAI-1 and PAI-1 from several species, with IC50 values of 19 nM (mouse), 22 nM (rat), and 18 nM (porcine).
Biological Activity I Assay Protocols (From Reference)
Targets
CDE-096 targets plasminogen activator inhibitor-1 (PAI-1), the primary physiological inhibitor of tissue plasminogen activator (tPA) and urokinase plasminogen activator (uPA). By inhibiting PAI-1, CDE-096 prevents the inactivation of tPA and uPA, promoting fibrinolysis and the degradation of extracellular matrix. This mechanism is relevant to thrombotic and fibrotic diseases.
ln Vitro
CDE-096 is effective against vitronectin-bound PAI-1 as well as free PAI-1. With nanomolar affinity, CDE-096 binds to PAI-1 and causes conformational changes that inhibit binding to vitronectin and proteases [1].
CDE-096 is a potent inhibitor of PAI-1 with an IC50 of 30 nM for tPA and 25 nM for uPA. It inhibits glycosylated PAI-1 and PAI-1 from mouse, rat, and porcine sources with IC50 values of 19, 22, and 18 nM, respectively. The compound's potent inhibitory activity across species makes it a valuable tool for studying PAI-1 function.
ln Vivo
Specific in vivo activity data for CDE-096 is not extensively detailed in the available literature. As a PAI-1 inhibitor, it has potential applications in thrombotic and fibrotic diseases. Further studies are needed to fully characterize its in vivo efficacy in animal models of these diseases. Its potent in vitro activity suggests potential for in vivo efficacy.
Enzyme Assay
CDE-096's activity as a PAI-1 inhibitor is assessed using in vitro enzyme assays that measure its ability to prevent PAI-1 from inhibiting tPA or uPA. These assays typically involve incubating PAI-1 with the compound and then adding tPA or uPA. The residual activity of tPA or uPA is measured using a chromogenic substrate to determine the IC50.
Cell Assay
Cellular assays for CDE-096 would involve treating cells that express PAI-1 with the compound and measuring its effects on PAI-1 activity and downstream processes such as fibrinolysis and cell migration. The compound's ability to inhibit PAI-1-mediated effects on extracellular matrix degradation can also be assessed.
Animal Protocol
In vivo animal model protocols for CDE-096 would involve its administration to animal models of thrombotic or fibrotic diseases. The compound's effects on fibrinolysis, clot resolution, and tissue fibrosis would be assessed. Studies may also evaluate its effects on biomarkers of PAI-1 activity.
ADME/Pharmacokinetics
CDE-096 has a molecular weight of 583.42 and a molecular formula of C25H20F3NO12. It is soluble in DMSO and is supplied as a solid. Specific pharmacokinetic data is not extensively detailed in the available literature. As a small molecule inhibitor, its pharmacokinetic properties would need to be evaluated in preclinical studies.
Toxicity/Toxicokinetics
CDE-096 is intended for research use only and not for human consumption. As a research compound, its comprehensive toxicological profile may not be fully characterized. Standard safety assessments would be required for clinical development. The compound is typically stored under recommended conditions.
References

[1]. Mechanistic characterization and crystal structure of a small molecule inactivator bound to plasminogen activator inhibitor-1. Proc Natl Acad Sci U S A. 2013;110(51):E4941-E4949.

Additional Infomation
CDE-096 (CAS# 1228357-04-7) is a research compound used to study PAI-1 function and its role in thrombotic and fibrotic diseases. It is a potent PAI-1 inhibitor with activity against PAI-1 from multiple species. It is not approved for clinical use. The compound is a valuable tool for investigating the therapeutic potential of PAI-1 inhibition.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C25H20F3NO12
Molecular Weight
583.421018600464
Exact Mass
583.093
CAS #
1228357-04-7
PubChem CID
59350299
Appearance
White to off-white solid powder
LogP
3.4
Hydrogen Bond Donor Count
7
Hydrogen Bond Acceptor Count
15
Rotatable Bond Count
11
Heavy Atom Count
41
Complexity
884
Defined Atom Stereocenter Count
0
SMILES
FC(C1C=CC=C(C=1)OC(NCC(COC(C1C=C(C(=C(C=1)O)O)O)=O)OC(C1C=C(C(=C(C=1)O)O)O)=O)=O)(F)F
InChi Key
OXWKLJPAKUDPJY-UHFFFAOYSA-N
InChi Code
InChI=1S/C25H20F3NO12/c26-25(27,28)13-2-1-3-14(8-13)41-24(38)29-9-15(40-23(37)12-6-18(32)21(35)19(33)7-12)10-39-22(36)11-4-16(30)20(34)17(31)5-11/h1-8,15,30-35H,9-10H2,(H,29,38)
Chemical Name
[3-[[3-(trifluoromethyl)phenoxy]carbonylamino]-2-(3,4,5-trihydroxybenzoyl)oxypropyl] 3,4,5-trihydroxybenzoate
Synonyms
CDE096; CDE 096; CDE-096
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: Please store this product in a sealed and protected environment (e.g. under nitrogen), avoid exposure to moisture and light.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~100 mg/mL (~171.40 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (4.29 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.5 mg/mL (4.29 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 2.5 mg/mL (4.29 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.7140 mL 8.5702 mL 17.1403 mL
5 mM 0.3428 mL 1.7140 mL 3.4281 mL
10 mM 0.1714 mL 0.8570 mL 1.7140 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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