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CCI-006

Cat No.:V31050 Purity: ≥98%
CCI-006 is a selective inhibitor and chemosensitizer of MLL-recombinant leukemia cells, leading to insurmountable mitochondrial depolarization and pro-apoptotic unfolded protein response in MLL-recombinant leukemia cells by inhibiting mitochondrial respiration.
CCI-006
CCI-006 Chemical Structure CAS No.: 292053-42-0
Product category: New2
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
5mg
10mg
100mg
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Product Description
CCI-006 is a selective inhibitor and chemosensitizer of MLL-recombinant leukemia cells, leading to insurmountable mitochondrial depolarization and pro-apoptotic unfolded protein response in MLL-recombinant leukemia cells by inhibiting mitochondrial respiration.
Biological Activity I Assay Protocols (From Reference)
Targets
- Mitochondrial respiratory chain (inhibits mitochondrial respiration) [1]
- Unfolded protein response (UPR) pathway (activates eIF2α phosphorylation) [1]
- Apoptotic machinery (induces caspase-dependent apoptosis) [1]
ln Vitro
- CCI-006 demonstrated selective cytotoxicity against 7/11 (64%) of tested MLL-rearranged (MLL-r) leukemia cell lines (PER-485, MOLM-13, MV4;11) at 10 μM, while sparing MLL-wild-type leukemia cells, solid tumor cells, and normal cells (including peripheral blood mononuclear cells from healthy donors at concentrations up to 20 μM) [1]
- CCI-006 induced rapid mitochondrial membrane depolarization within 1 hour of treatment in sensitive MLL-r cells (e.g., PER-485), followed by apoptosis (significant increase in Annexin V+ cells within 3 hours) [1]
- CCI-006 inhibited proliferation of sensitive MLL-r leukemia cells with IC50 values in the low micromolar range (0.1-10 μM) depending on cell line [1]
- CCI-006 induced eIF2α phosphorylation and reduced polysome formation (inhibited protein translation) exclusively in sensitive MLL-r cells [1]
- CCI-006 triggered caspase-3 and PARP cleavage, which was partially prevented by pre-treatment with pan-caspase inhibitor Q-VD-OPh (10 μM) [1]
Enzyme Assay
- Mitochondrial respiration assay: Mouse liver mitochondria were isolated and treated with 1 μM CCI-006. Oxygen consumption rate was measured using a Clark electrode. CCI-006 significantly reduced mitochondrial respiration by 40-60% compared to untreated controls [1]
- eIF2α phosphorylation assay: Cell lysates from CCI-006-treated (5 μM, 1-3 hours) and control cells were prepared. Western blotting was performed using antibodies against phosphorylated eIF2α (p-eIF2α) and total eIF2α to detect UPR activation specifically in sensitive MLL-r cells [1]
Cell Assay
- Cell viability assay: MLL-r leukemia cells (5×10³ cells/well) were plated in 96-well plates and treated with CCI-006 (0.1-20 μM) for 72 hours. Cell viability was measured using resazurin reduction assay (fluorescence at 570 nm/600 nm). IC50 values were calculated for sensitive cell lines [1]
- Mitochondrial membrane potential assay: Cells were treated with CCI-006 (5 μM) for 1 hour, stained with JC-1 dye, and analyzed by flow cytometry to quantify depolarized mitochondria (reduced red/green fluorescence ratio) [1]
- Apoptosis assay: Cells were treated with CCI-006 (5 μM) for 3-24 hours, stained with Annexin V-FITC and propidium iodide, and analyzed by flow cytometry to determine percentage of apoptotic cells [1]
- Polysome profiling: CCI-006-treated (5 μM, 1 hour) and control cells were lysed, and polysomes were separated by sucrose gradient centrifugation. Absorbance at 254 nm was monitored to assess translation activity (decreased polysome peaks indicated inhibition of protein synthesis) [1]
Animal Protocol
- Formulation for potential in vivo use: CCI-006 can be dissolved in DMSO (stock solution: ≥83.33 mg/mL) and further diluted in a vehicle containing 10% DMSO + 40% PEG300 + 5% Tween-80 + 45% saline for animal administration [1]
ADME/Pharmacokinetics
CCI-006 exhibited low stability in liver microsomal stability tests, indicating that it is rapidly metabolized in vivo and may not be suitable for systemic administration without structural modification [1].
References

[1]. A novel small molecule that kills a subset of MLL-rearranged leukemia cells by inducing mitochondrial dysfunction. Oncogene. 2019 Jan 22.

Additional Infomation
CCI-006 is a small molecule that selectively kills MLL rearrangement leukemia cells by inducing mitochondrial dysfunction, thereby activating the unfolded protein response (UPR) and apoptosis [1]. The sensitivity of MLL rearrangement leukemia cells to CCI-006 is associated with relatively low expression levels of MEIS1, HIF1α, and ATP5A (a subunit of mitochondrial ATP synthase) [1]. CCI-006 contains a sulfonamide group, which may help inhibit carbonic anhydrase (but this is not its primary mechanism of action) [1]. Sensitive MLL rearrangement leukemia cells rely more on mitochondrial respiration than glycolysis for energy, making them more susceptible to CCI-006-induced mitochondrial dysfunction [1]. CCI-006 represents a novel approach to treating MLL rearrangement leukemia by targeting metabolic vulnerability [1].
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C15H12N2O5S
Molecular Weight
332.331182479858
Exact Mass
332.046
CAS #
292053-42-0
PubChem CID
710526
Appearance
Light yellow to yellow solid powder
LogP
1.9
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
7
Rotatable Bond Count
5
Heavy Atom Count
23
Complexity
620
Defined Atom Stereocenter Count
0
SMILES
S(C1C=CC(=CC=1)C1=CC=C(C=C(C#N)C(=O)OC)O1)(N)(=O)=O
InChi Key
VEXAKEBSBMAIOB-DHZHZOJOSA-N
InChi Code
InChI=1S/C15H12N2O5S/c1-21-15(18)11(9-16)8-12-4-7-14(22-12)10-2-5-13(6-3-10)23(17,19)20/h2-8H,1H3,(H2,17,19,20)/b11-8+
Chemical Name
methyl (E)-2-cyano-3-[5-(4-sulfamoylphenyl)furan-2-yl]prop-2-enoate
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ≥ 83.33 mg/mL (~250.74 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 8.33 mg/mL (25.07 mM) (saturation unknown) in 10% DMSO + 40% PEG300 +5% Tween-80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 83.3 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 + to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.0091 mL 15.0453 mL 30.0906 mL
5 mM 0.6018 mL 3.0091 mL 6.0181 mL
10 mM 0.3009 mL 1.5045 mL 3.0091 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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g/mol

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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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