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BOP Reagent

Cat No.:V36098 Purity: ≥98%
BOP (hexafluorophosphate) is a biochemical compound that can be used as a biomaterial or organic/chemical reagent for biomedical research.
BOP Reagent
BOP Reagent Chemical Structure CAS No.: 56602-33-6
Product category: Peptides
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
BOP (hexafluorophosphate) is a biochemical compound that can be used as a biomaterial or organic/chemical reagent for biomedical research.
BOP Reagent (Benzotriazol-1-yloxytris(dimethylamino)phosphonium hexafluorophosphate, CAS 56602-33-6) is a phosphonium-based peptide coupling reagent. With a molecular formula of C12H22F6N6OP2 and a molecular weight of 442.28, this compound is widely used in peptide synthesis. It is employed in the preparation of phenyl esters of amino acids and promotes efficient coupling with minimal racemization.
Biological Activity I Assay Protocols (From Reference)
Targets
BOP Reagent targets the carboxyl group of amino acids, activating it for nucleophilic attack by the amino group of another amino acid. It is a coupling reagent that facilitates amide bond formation in peptide synthesis. The reagent contains a benzotriazole leaving group and a phosphonium core, promoting efficient coupling. Its primary utility is as a chemical reagent in peptide chemistry, not as a compound with a biological target.
ln Vitro
BOP Reagent does not exhibit pharmacological activity in vitro. As a chemical reagent, it is used to facilitate peptide bond formation rather than as a bioactive compound. In vitro studies using this compound focus on its chemical reactivity in peptide synthesis reactions. The reagent is typically used in the presence of a base such as triethylamine or Hünig's base and forms HOBt in situ, which then generates an activated ester.
ln Vivo
BOP Reagent is not a pharmacologically active compound and does not have defined in vivo activity as a drug. Its primary value is as a chemical reagent in synthetic chemistry, where it serves as a coupling agent for the preparation of peptides and other amide-containing compounds. It is not intended for in vivo administration in any therapeutic context.
Enzyme Assay
In vitro assays for BOP Reagent focus on its chemical properties as a coupling reagent. A standard protocol involves dissolving the reagent in a suitable solvent such as DMF or DCM, along with the carboxylic acid component and an amine. A base such as DIPEA or TEA is added, and the reaction is allowed to proceed at room temperature. The progress of the coupling reaction is monitored by HPLC or TLC. The reagent is especially valued for its high reactivity and mild reaction conditions.
Cell Assay
In vitro cellular assays using BOP Reagent are not performed, as the compound is a chemical reagent used in organic synthesis rather than a bioactive molecule. Its use is confined to the laboratory, where it serves as a coupling agent for the preparation of peptides and other compounds. It is not designed for cell culture studies.
Animal Protocol
In vivo animal studies with BOP Reagent are not conducted, as the compound is a chemical reagent rather than a pharmacologically active agent. Its use is confined to the laboratory, where it serves as a coupling agent for the preparation of peptides.
ADME/Pharmacokinetics
BOP Reagent is not a drug candidate, and pharmacokinetic data are not available. As a chemical reagent, it is designed for use in organic synthesis rather than systemic administration. Its use is confined to in vitro synthetic applications.
Toxicity/Toxicokinetics
BOP Reagent is generally considered to have low toxicity, consistent with its use as a chemical reagent. It is insoluble in water. The compound should be stored under appropriate conditions. Standard laboratory safety precautions, including the use of personal protective equipment, are recommended.
References

[1]. BOP reagent for the coupling of pGlu and Boc-His(Tos) in solid phase peptide synthesis. Int J Pept Protein Res. 1990;35(2):89-94.

[2]. Facile Modifications at the C4 Position of Pyrimidine Nucleosides via In Situ Amide Activation with 1H-Benzotriazol-1-yloxy-tris(dimethyl-amino)phosphonium Hexafluorophosphate. Curr Protoc Nucleic Acid Chem. 2019;76(1):e73.

Additional Infomation
BOP Reagent (Benzotriazol-1-yloxytris(dimethylamino)phosphonium hexafluorophosphate, CAS 56602-33-6) is a peptide coupling reagent. Its chemical formula is C12H22F6N6OP2 and molecular weight is 442.28. The reagent is used in the preparation of phenyl esters of amino acids and promotes efficient coupling with minimal racemization. It is intended for research use only.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C12H22F6N6OP2
Molecular Weight
442.2806
Exact Mass
442.123
CAS #
56602-33-6
Related CAS #
56602-32-5 (Parent)
PubChem CID
151348
Appearance
White to off-white solid powder
Melting Point
>130 °C (dec.)(lit.)
Flash Point
138°C
LogP
4.604
Hydrogen Bond Donor Count
0
Hydrogen Bond Acceptor Count
13
Rotatable Bond Count
5
Heavy Atom Count
27
Complexity
368
Defined Atom Stereocenter Count
0
SMILES
[P+](N(C([H])([H])[H])C([H])([H])[H])(N(C([H])([H])[H])C([H])([H])[H])(N(C([H])([H])[H])C([H])([H])[H])ON1C2=C([H])C([H])=C([H])C([H])=C2N=N1.[P-](F)(F)(F)(F)(F)F
InChi Key
MGEVGECQZUIPSV-UHFFFAOYSA-N
InChi Code
InChI=1S/C12H22N6OP.F6P/c1-15(2)20(16(3)4,17(5)6)19-18-12-10-8-7-9-11(12)13-14-18;1-7(2,3,4,5)6/h7-10H,1-6H3;/q+1;-1
Chemical Name
benzotriazol-1-yloxy-tris(dimethylamino)phosphanium;hexafluorophosphate
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~100 mg/mL (~226.10 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (5.65 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.5 mg/mL (5.65 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 2.5 mg/mL (5.65 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.2610 mL 11.3051 mL 22.6101 mL
5 mM 0.4522 mL 2.2610 mL 4.5220 mL
10 mM 0.2261 mL 1.1305 mL 2.2610 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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