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Bis-PEG13-NHS ester

Cat No.:V16235 Purity: ≥98%
Bis-PEG9-NHS ester is a PROTAC bridge, belonging to the Polyethylene glycol (PEG) category and the Alkyl/ether class.
Bis-PEG13-NHS ester
Bis-PEG13-NHS ester Chemical Structure CAS No.: 2221949-00-2
Product category: New1
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
Bis-PEG9-NHS ester is a PROTAC bridge, belonging to the Polyethylene glycol (PEG) category and the Alkyl/ether class. Bis-PEG9-NHS ester may be utilized to prepare a veriety of PROTAC protein degraders. Bis-PEG9-NHS ester is a cleavable ADC bridge used for the synthesis of antibody active molecule conjugates (ADCs).
Bis-PEG13-NHS ester (CAS 2221949-00-2) is a PEG/Alkyl/ether-based linker used in the synthesis of PROTACs (proteolysis-targeting chimeras) and antibody-drug conjugates (ADCs). It is a cleavable ADC linker and a PEG-based PROTAC linker. Bis-PEG13-NHS ester is a bifunctional crosslinker containing two NHS ester groups that react with primary amines to form stable amide bonds. As a PROTAC linker, it connects an E3 ubiquitin ligase ligand to a target protein ligand. As an ADC linker, it conjugates antibodies to active drug molecules. The compound is a linear, non-cleavable linker utilized in the synthesis of ADCs and PROTACs, where its reactive NHS esters form stable amide bonds with primary amines on proteins, peptides, or other biomolecules. The PEG13 chain provides hydrophilicity and may improve solubility and pharmacokinetic properties of the final conjugate. Bis-PEG13-NHS ester is available as a research-grade chemical linker for bioconjugation applications.
Biological Activity I Assay Protocols (From Reference)
Targets
Bis-PEG13-NHS ester is not a drug itself but a chemical linker used in the synthesis of therapeutic agents. As a PROTAC linker, it connects an E3 ubiquitin ligase ligand to a target protein ligand, enabling the targeted degradation of specific proteins. As an ADC linker, it conjugates antibodies to active drug molecules, enabling the targeted delivery of cytotoxic agents to cancer cells. The compound contains two NHS ester groups that react with primary amines to form stable amide bonds. The PEG13 chain provides hydrophilicity and may improve solubility and pharmacokinetic properties of the final conjugate. The compound's role as a linker is critical for the function of PROTACs and ADCs, as it determines the stability, solubility, and pharmacokinetic properties of the final molecule.
ln Vitro
Two distinct ligands, one for the E3 ubiquitin ligase and the other for the target protein, are present in PROTAC and are joined by a linker. PROTAC targets and selectively degrades target proteins by means of the intracellular ubiquitin-proteasome system. An ADC cytotoxin is connected to an antibody by use of an ADC linker to form an ADC.
Bis-PEG13-NHS ester does not have intrinsic in vitro activity as it is not a drug. Its activity is dependent on the final PROTAC or ADC molecule synthesized using this linker. In the context of PROTACs, the linker connects the E3 ligase ligand and the target protein ligand, enabling the formation of a ternary complex that leads to ubiquitination and degradation of the target protein. In the context of ADCs, the linker connects the antibody to the cytotoxic drug, enabling targeted delivery to cancer cells. The PEG13 chain provides hydrophilicity and may improve solubility and pharmacokinetic properties of the final conjugate.
ln Vivo
Bis-PEG13-NHS ester does not have intrinsic in vivo activity as it is not a drug. In vivo activity depends on the final PROTAC or ADC molecule synthesized using this linker. The linker's properties, such as stability, solubility, and pharmacokinetics, can influence the in vivo activity of the final conjugate. The PEG13 chain provides hydrophilicity and may improve solubility and pharmacokinetic properties of the final conjugate.
Enzyme Assay
Bis-PEG13-NHS ester is not a drug and does not have enzyme/receptor binding activity. It is a chemical crosslinker used in bioconjugation. Characterization includes NMR and HPLC analysis to confirm structure and purity. The compound's reactivity with primary amines is the basis for its use in bioconjugation.
Cell Assay
Bis-PEG13-NHS ester is used in in vitro bioconjugation reactions. The compound is incubated with amine-containing molecules (e.g., proteins, peptides, or small molecules) in appropriate buffer (pH 7-9). Conjugation efficiency is assessed by SDS-PAGE, mass spectrometry, or HPLC. The compound's reactivity with primary amines allows for the formation of stable amide bonds. These in vitro reactions are essential for the synthesis of PROTACs and ADCs.
Animal Protocol
Bis-PEG13-NHS ester is used in the synthesis of ADCs and PROTACs, which are then evaluated in animal models. In vivo efficacy depends on the therapeutic agent synthesized using this linker, not the linker itself. The linker's properties can influence the pharmacokinetics and efficacy of the final conjugate. The PEG13 chain provides hydrophilicity and may improve solubility and pharmacokinetic properties of the final conjugate.
ADME/Pharmacokinetics
As a chemical linker, Bis-PEG13-NHS ester does not have intrinsic pharmacokinetic properties. The PK of the final ADC or PROTAC molecule depends on the overall molecular structure. The PEG13 chain provides hydrophilicity and may improve solubility and pharmacokinetic properties.
Toxicity/Toxicokinetics
Bis-PEG13-NHS ester is a chemical reagent for research use only. Toxicity depends on the final conjugated molecule. Standard safety precautions for handling NHS esters apply, including avoidance of moisture and use of appropriate personal protective equipment. The compound should be stored according to the manufacturer's recommendations, typically at -20°C, to ensure stability.
References

[1]. Targeting m2-like tumor-associated macrophages by using melittin-based pro-apoptotic peptide. WO2019212324A1.

Additional Infomation
Bis-PEG13-NHS ester (CAS 2221949-00-2) is a research-grade chemical linker. It is a PEG/Alkyl/ether-based PROTAC linker and a cleavable ADC linker. The compound contains two NHS ester groups that react with primary amines to form stable amide bonds. It is used in the synthesis of PROTACs and ADCs. The PEG13 chain provides hydrophilicity and may improve solubility and pharmacokinetic properties of the final conjugate. The compound is not a drug and has no clinical approval. It is intended for research purposes only. When handling Bis-PEG13-NHS ester, researchers should follow standard safety protocols for handling chemical reagents, including the use of appropriate personal protective equipment and working in a well-ventilated area.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C38H64N2O21
Molecular Weight
884.92
Exact Mass
708.295
CAS #
2221949-00-2
PubChem CID
77078480
Appearance
Colorless to light yellow viscous liquid
Hydrogen Bond Donor Count
0
Hydrogen Bond Acceptor Count
17
Rotatable Bond Count
34
Heavy Atom Count
49
Complexity
890
Defined Atom Stereocenter Count
0
SMILES
O(C(C([H])([H])C([H])([H])OC([H])([H])C([H])([H])OC([H])([H])C([H])([H])OC([H])([H])C([H])([H])OC([H])([H])C([H])([H])OC([H])([H])C([H])([H])OC([H])([H])C([H])([H])OC([H])([H])C([H])([H])OC([H])([H])C([H])([H])OC([H])([H])C([H])([H])C(=O)ON1C(C([H])([H])C([H])([H])C1=O)=O)=O)N1C(C([H])([H])C([H])([H])C1=O)=O
InChi Key
OVDFFVRBNAHLOH-UHFFFAOYSA-N
InChi Code
InChI=1S/C38H64N2O21/c41-33-1-2-34(42)39(33)60-37(45)5-7-47-9-11-49-13-15-51-17-19-53-21-23-55-25-27-57-29-31-59-32-30-58-28-26-56-24-22-54-20-18-52-16-14-50-12-10-48-8-6-38(46)61-40-35(43)3-4-36(40)44/h1-32H2
Chemical Name
(2,5-dioxopyrrolidin-1-yl) 3-[2-[2-[2-[2-[2-[2-[2-[2-[2-[2-[2-[2-[3-(2,5-dioxopyrrolidin-1-yl)oxy-3-oxopropoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]propanoate
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: Please store this product in a sealed and protected environment, avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~100 mg/mL (~141.10 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (3.53 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.5 mg/mL (3.53 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 2.5 mg/mL (3.53 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.1300 mL 5.6502 mL 11.3005 mL
5 mM 0.2260 mL 1.1300 mL 2.2601 mL
10 mM 0.1130 mL 0.5650 mL 1.1300 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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