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Biocytin

Alias: Biotinyl-L-lysine; Biocytin; 576-19-2; N'-Biotinyl-L-lysine; H-Lys(biotinyl)-OH; Biotinyl-L-lysine; epsilon-N-Biotinyl-L-lysine; Ne-Biotynyl-L-lysine; N-biotinyl-L-lysine; Biocytin
Cat No.:V5469 Purity: ≥98%
Biocytin is a conjugated adduct of L-lysine and D-biotin.
Biocytin
Biocytin Chemical Structure CAS No.: 576-19-2
Product category: Endogenous Metabolite
This product is for research use only, not for human use. We do not sell to patients.
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Purity & Quality Control Documentation

Purity: ≥98%

Product Description

Biocytin is a conjugated adduct of L-lysine and D-biotin. It is hydrolyzed by biotinidase, which acts on peptide-incorporated biotin or free biotin. Biocytin acts as a coenzyme. Biocytin is used as a substrate to study the specificity and kinetics of biotinidase(s), to measure biotinidase deficiency and as a model compound to study various uptake mechanisms of cells and tissues. Biocytin has been used to label neurons, medium spiny neurons and optic nerves.

Biological Activity I Assay Protocols (From Reference)
Targets
Endogenous Metabolite
ln Vitro
With a variety of avidin-conjugated markers, Biocytin may be seen at both the light and electron microscopic levels because of its strong affinity for avidin. The appearance of dendritic and axonal arborizations can be seen with the application of biocytin[1]. With a vast dendritic arbor and small population of ON cone bipolar cells, the Biocytin wide-field bipolar cell in rabbit retina does not make contact with every cone within its dendritic field. Cone types were identified using antibodies against blue cone opsin and red-green cone opsin, after which bipolar cells were identified by selective absorption of Biocytin and labeling of the cones with peanut agglutinin. The Biocytin-labeled cells avoid cones that do not stain for blue cone opsin and make selective contact with cones whose outer segments do. A homolog of the blue cone bipolar cells previously identified in the retinas of primates, mice, and ground squirrels, the biocytin wide-field bipolar cell is an ON blue cone bipolar cell found in the retina of rabbits[3].
ln Vivo
One of the main characteristics of brains is their profuse connectivity at different spatial scales. Understanding brain function evidently first requires a comprehensive description of neuronal anatomical connections. Not surprisingly a large number of histological markers were developed over the years that can be used for tracing mono- or polysynaptic connections. Biocytin is a classical neuroanatomical tracer commonly used to map brain connectivity. However, the endogenous degradation of the molecule by the action of biotinidase enzymes precludes its applicability in long-term experiments and limits the quality and completeness of the rendered connections. With the aim to improve the stability of this classical tracer, two novel biocytin-derived compounds were designed and synthesized. Here we present their greatly improved stability in biological tissue along with retained capacity to function as neuronal tracers. The experiments, 24 and 96 h postinjection, demonstrated that the newly synthesized molecules yielded more detailed and complete information about brain networks than that obtained with conventional biocytin. Preliminary results suggest that the reported molecular designs can be further diversified for use as multimodal tracers in combined MRI and optical or electron microscopy experiments. [1]
The connectivity and cytoarchitecture of telencephalic centers except dorsal and medial pallium were studied in the fire-bellied toad Bombina orientalis by anterograde and retrograde Biocytin labeling and intracellular Biocytin injection (total of 148 intracellularly labeled neurons or neuron clusters). Our findings suggest the following telencephalic divisions: (1) a central amygdala-bed nucleus of the stria terminalis in the caudal midventral telencephalon, connected to visceral-autonomic centers; (2) a vomeronasal amygdala in the caudolateral ventral telencephalon receiving input from the accessory olfactory bulb and projecting mainly to the preoptic region/hypothalamus; (3) an olfactory amygdala in the caudal pole of the telencephalon lateral to the vomeronasal amygdala receiving input from the main olfactory bulb and projecting to the hypothalamus; (4) a medial amygdala receiving input from the anterior dorsal thalamus and projecting to the medial pallium, septum, and hypothalamus; (5) a ventromedial column formed by a nucleus accumbens and a ventral pallidum projecting to the central amygdala, hypothalamus, and posterior tubercle; (6) a lateral column constituting the dorsal striatum proper rostrally and the dorsal pallidum caudally, and a ventrolateral column constituting the ventral striatum. We conclude that the caudal mediolateral complex consisting of the extended central, vomeronasal, and olfactory amygdala of anurans represents the ancestral condition of the amygdaloid complex. During the evolution of the mammalian telencephalon this complex was shifted medially and involuted. The mammalian basolateral amygdala apparently is an evolutionary new structure, but the medial portion of the amygdalar complex of anurans reveals similarities in input and output with this structure and may serve similar functions.[2]
The Biocytin wide-field bipolar cell in rabbit retina has a broad axonal arbor in layer 5 of the inner plexiform layer and a wide dendritic arbor that does not contact all cones in its dendritic field. The purpose of our study was to identify the types of cones that this cell contacts. We identified the bipolar cells by selective uptake of Biocytin, labeled the cones with peanut agglutinin, and then used antibodies against blue cone opsin and red-green cone opsin to identify the individual cone types. The biocytin-labeled cells selectively contacted cones whose outer segments stained for blue cone opsin and avoided cones that did not. We conclude that the biocytin wide-field bipolar cell is an ON blue cone bipolar cell in the rabbit retina and is homologous to the blue cone bipolar cells that have been previously described in primate, mouse, and ground squirrel retinas [3].
Animal Protocol
In Vivo Rat Experiments [1]
To test whether the newly designed tracers, L1 and L2, were more stable in vivo than conventional Biocytin (L), we performed iontophoretic injections of all three compounds into the cortex of 10 albino rats (Sprague−Dawley). Five rats (two with L, one with L1, and two with L2) were sacrificed after a survival time of 24 h, three rats (with L, L1, and L2) after a survival time of 96 h, and two rats (with L and L1) after 1 h. For the experiments, 120 specimens of the fire-bellied toad Bombina orientalis were used. The animals were taken from a breeding colony at our institute. For the reconstruction of the anatomy of the telencephalon, 15-μm-thick transverse, horizontal and sagittal sections were made, embedded in paraffin, and counterstained with Klüver-Barrera. For the Biocytin labeling experiments, animals were deeply anesthetized in 0.5% tricaine methanesulfonate, cooled to a body temperature of 5°C, and perfused transcardially with 40 ml of ice-cold oxygenated Ringer's solution consisting of Na+ 100 mM, K+ 2 mM, Ca2+ 2 mM, Mg2+ 0.5 mM, Cl− 82 mM, HCO3− 25 mM, glucose 11 mM, buffered to a final pH of 7.3 through continuous perfusion of 95% O2 + 5% CO2. Brains were removed from the skull by a ventral approach.

Anterograde and retrograde labeling was made by application of Biocytin crystals to the brain. The isolated brains, either intact or longitudinally split into two halves, were exposed to the air and dried by using paper tissue, before small lesions were made with a glass micropipette at the site of application. The application sites and the number and mode of application are listed in Table 1. Ten minutes were allowed for the uptake of biocytin. Afterward, the brains were stored in Ringer's solution at room temperature for 4 hours and at 4°C for 16 to 32 hours. Brains were fixed in 2% paraformaldehyde and 2% glutaraldehyde, then 50-μm-thick transverse sections were cut on a Vibratome. Biocytin was visualized by means of an avidin-biotin-horseradish peroxidase complex using diaminobenzidine as chromogen with heavy-metal intensification (Adams, 1981). Sections were lightly counterstained with cresyl violet, dehydrated in ethanol, cleared in xylene, and cover-slipped.

For intracellular labeling experiments, brains were split longitudinally, and half of the brain was fixed with stainless steel insect pins on the floor of a recording chamber (modified after Schaffer, 1982) with the cut medial surface pointing upward. The brain was continuously perfused with oxygenated Ringer's solution (6 ml/min) at a temperature of 14–18°C. The medial approach turned out to be favorable, because myelinated fibers below the lateral and ventral surfaces form a strong barrier to microelectrode penetrations. However, due to that method, possible contralateral projections of neurons could only be identified by their axons or axon collaterals entering the commissures. For intracellular labeling, micropipettes were filled with a 2% solution of Biocytin dissolved in 0.3 M potassium chloride. The impedance of the electrodes was 80–160 MΩ. The electrodes were advanced in steps of 1 or 2 μm, while a 200-msec hyperpolarizing current of 0.2 nA was applied every second. When a nerve cell membrane was penetrated, the potential dropped from −20 to −65 mV. For injection of Biocytin, a pulsed current of 1 nA was applied for 4 minutes. Usually, only one injection was done in each half of the brain. After the injection, brains were stored in oxygenated Ringer's solution at room temperature for 3 hours and at 4°C overnight. The brains were processed as described above for the anterograde and retrograde labeling experiments. Reconstructions of labeled neurons were made by hand with the aid of a camera lucida. Sections were scanned with a digital camera at a resolution of 3,900 × 3,090 pixels.[2]


Wide-field bipolar cells were selectively labeled in rabbit retinas by vitreal injections of Biocytin. Adult New Zealand White rabbits were first anesthetized with an intramuscular injection of ketamine (30 – 60 mg/kg) and xylazine (10 mg/kg) and then 20 μl of 5% Biocytin in ddH2O and 0.5% DMSO were injected into each eye. After 40 – 50 hour incubations, the rabbits were reanesthetized using the same agents and the eyes were ennucleated, hemisected and the retinas removed from the eye cup while immersed in oxygenated Ames Medium. Rabbits were euthanized with Euthosol (100 mg/kg, iv). Free floating retinas were fixed for 60 – 90 minutes in 4% formaldehyde and rinsed thoroughly in three changes of sodium phosphate buffer (0.1M, pH 7.4) over 30 minutes. For retinal wholemounts, tissue was stained immediately with antibodies. For retinal sections, tissue was embedded in 4% agarose (low melting point) and cut into 60 μm sections using a vibratome.

The tissue was processed to reveal Biocytin next. Retinas were incubated overnight at 4°C in 0.25M Tris buffer with 0.5% Triton-X 100, rinsed in the same buffer the next day and then incubated for two days in avidin DN.. After rinsing, the retinas were incubated overnight in fluorescein anti-avidin D followed by thorough rinsing in buffer.

The final step was to label all cones with peanut agglutinin, which labels certain disaccharides on the surface of outer and inner segments of all cones and in punctuate regions at the cone pedicles. Endogenous avidin and biotin in the retina was blocked by preincubating the tissue in an avidin/biotin blocking solution for 30 minutes at room temperature, rinsed in tris buffer and then incubated with biotinolated peanut agglutinin in the microwave at 150 watts for 13 minutes. The tissue was rinsed in sodium phosphate buffer (3 × 60 sec) and the lectin revealed with Texas Red conjugated strepavidin for 10 minutes, rinsed thoroughly in phosphate buffer and coverslipped in Vectashield shortly before viewing in the microscope. Retinal sections were processed using the same procedures except for the Biocytin step; incubation in avidin DN was shortened to overnight (rather than several days) and to two hours in fluorescein anti-avidin.
Imaging [3]
Labeled retinas were imaged with an Olympus Fluoview 300 Confocal microscope equipped with helium, argon and neon lasers and an Olympus 60 X water immersion objective (NA 1.2) at resolutions of 1024 × 1024 or 2048 × 2048. A series of optical sections in a single channel were collected every 0.5 μm in the inner plexiform layer to show the wide-field bipolar cell axons, in the outer plexiform layer to show the contacts made by the bipolar cell dendrites with overlying cones, and through the outer nuclear layer to link individual cone pedicles with corresponding outer segments. Each channel was scanned separately to reduce spectral cross-talk between channels. Comparisons of the cones, opsins and the Biocytin labeled cells were made by merging images of like focal planes using MetaVue (v 6.1) or Adobe PhotoShop and corrected for brightness and contrast using Adobe Photoshop.
References

[1]. Improved neuronal tract tracing with stable biocytin-derived neuroimaging agents. ACS Chem Neurosci. 2010 Feb 17;1(2):129-38.

[2]. Morphology and axonal projection pattern of neurons in the telencephalon of the fire-bellied toad Bombina orientalis: an anterograde, retrograde, and intracellular biocytin labeling study. J Comp Neurol. 2004 Oct 4;478(1):35-61.

[3]. Biocytin wide-field bipolar cells in rabbit retina selectively contact blue cones. J Comp Neurol. 2008 Jan 1;506(1):6-15.

Additional Infomation
Biocytin is a monocarboxylic acid amide that results from the formal condensation of the carboxylic acid group of biotin with the N(6)-amino group of L-lysine. It has a role as a mouse metabolite. It is an azabicycloalkane, a thiabicycloalkane, a member of ureas, a monocarboxylic acid amide, a non-proteinogenic L-alpha-amino acid and a L-lysine derivative. It is functionally related to a biotin. It is a tautomer of a Biocytin zwitterion.
Biocytin has been reported in Homo sapiens and Brassica napus with data available.
In summary, the new stable tracing agents (L1 and L2) were designed and synthesized, and an assessment of their uptake and transport ability by commonly used histochemical procedures was performed. The linking of biotin and lysine moieties in both molecules were performed in such a way that the new molecules are resistant to cleavage by the action of biotinidase. The in vivo experiments performed on these synthesized derivatives of Biocytin proved that they are indeed more stable conjugates. The staining of neuronal cell bodies and fibers at the injection site and remote terminal fields were retained even at 96 h postinjection times, when commercial biocytin was nearly degraded. Anterograde or retrograde transport could be found in the ipsi- and contralateral cortex, striatum, thalamus, and further down in the brain stem, demonstrating their efficient transport along axons. Thus L1 and L2 represent an excellent alternative for conventional histological studies that would alleviate the problems caused by the endogenous degradation of the tracer molecule before the animal is sacrificed. Importantly, the molecular design of these agents could be easily diversified for use as multimodal tracers after coupling different reporter moieties. Thus, the reported molecules could serve as a potent tool for the development of agents that can be visualized with magnetic resonance imaging and thus be used for the in vivo study of brain connectivity. [1]
In the present study, a combination of antero- and retrograde and intracellular Biocytin labeling was used, because both approaches have characteristic advantages and disadvantages. Anterograde and retrograde labeling give a good quantitative estimate of the connections of a given brain area, but no detailed information about the morphology of single neurons and their axonal projections. In addition, this method may lead to inadvertent lesioning of passing fibers, and neurons with very wide dendritic trees may be labeled by means of dendrites instead of axons. Intracellular injections on the other hand yield no quantitative information about the strength of projections and may be biased by differences in the accessibility and penetrability of neurons. For example, while in Bombina orientalis it was relatively easy to penetrate neurons in the medial, central, and lateral amygdala as well as in the ventral striatum and ventral pallidum by a medial approach in the longitudinally split brain, neurons in the lateral pallium, SPTA, and dorsal striatum were more difficult to label, because they could be reached only by crossing the ventricle. Labeling of septal neurons was most difficult, because the cells are rather loosely arranged and easily escape the microelectrode tip. Despite these caveats, only few major differences between the results from anterograde, retrograde and intracellular labeling were observed. Projections of the ventral–lateral pallium to the ventral–lateral septum, ventral pallidum, nucleus accumbens, hypothalamus, nucleus parabrachialis/nucleus visceralis secundarius, and medulla oblongata were revealed by retrograde and partially by anterograde labeling, but not by intracellular labeling. Anterograde labeling also revealed projections of the SPTA to the optic tectum and torus semicircularis and of the ventral–lateral pallium to the posterior tubercle, which were not found by intracellular labeling. On the other hand, intracellular injection into cells of the nucleus accumbens, but not anterograde tracing, revealed projections to the tegmentum and medulla oblongata. Some differences become visible, when anterograde and retrograde staining results are compared, because in our hands, Biocytin revealed a better anterograde than retrograde transport. For example, tracer application to the medulla resulted in fiber labeling in the accessory olfactory bulb, whereas application to the accessory olfactory bulb did not reveal retrogradely stained neurons in the medulla. The lateral pallium was not intensely studied here and deserves a more detailed analysis. Our anterograde and retrograde tracing experiments suggest that the ventral–lateral pallium is distinct from the dorsal–lateral pallium. It receives input from the main olfactory tract and, in contrast to the dorsal–lateral pallium, reveals a strong back projection to the main olfactory bulb. In the very caudal ventral portion of the ventral–lateral pallium and close to the caudal “loop” of the medial olfactory tract, a distinct cell group continuous with the adjacent caudal SPTA was labeled after application of Biocytin to the hypothalamus (cf. Figs. 6, 7). The rostrally adjacent column constituted by the ventral–lateral pallium and SPTA only revealed scattered retrogradely labeled neurons. Based on its probable input from the main olfactory bulb and its projection to the hypothalamus, we believe that at least the caudally labeled cluster of neurons are homologous to the cortical or “olfactory” amygdala of mammals, as was already suggested by Scalia et al. (1991). [2]
The Biocytin stained wide-field bipolar cell is the rabbit's equivalent of the mammalian ON blue cone bipolar cell that has been described in monkey, mouse and ground squirrel retinas (Kouyama and Marshak, 1992; Haverkamp et al., 2005; Li and DeVries, 2006). Like its mammalian counterparts, the rabbit's wide-field cell is more than twice as large as any other bipolar cell type (MacNeil et al., 2004). Its axon resides in layer 5 of the the inner plexiform layer and is thus presumed to be an ON bipolar cell. Moreover, the dendrites of the wide-field cell extend throughout the inner plexiform layer and make selective contacts with cones that express blue cone opsin in their outer segments and avoid cones that do not. We assume that these points of contact represent synaptic junctions because we were able to follow the dendrites in through focus series into blue cone pedicles and see them terminate adjacent to patches of PNA labeling. Invaginating bipolar processes are a hallmark of ON cone bipolar cells and mark the locations where synapses between bipolar cells and cones occur (Hopkins and Boycott, 1995). A confocal study of the cone pedicle has shown that PNA labeling overlaps that of bassoon-immunoreactive ribbons and is in register with Goα, a marker for ON-bipolar cells (Haverkamp et al., 2001). This suggests that the proximity of the PNA label with the Biocytin stained processes in the blue cone pedicles reflects a synaptic relationship. Synaptic communication between blue cone bipolar cells and blue cones has been clearly shown by Li and DeVries (2006) in ground squirrel retina. They demonstrated that only one type of bipolar cell made exclusive contacts with blue cones and these contacts were functional; depolarization in a presynaptic cone generated a prominent outward current in a coupled bipolar cell. [2]

In addition to the contacts that the wide-field cell dendrites made with cones, the dendrites also included thin processes (Famiglietti, 1981) that merged with the thin dendrites of adjacent cells (Jeon and Masland, 1995). These processes usually arose from a terminal cluster aligned with a blue cone and were smooth and not associated with any cone pedicles that might suggest a synaptic junction. It is likely that gap junctions exist between the thin dendrites of adjacent cells, but their existence could not be established in the confocal images. [2]

One significant difference observed in the cone contacts of the rabbit wide-field bipolar cell was the degree of divergence of the photoreceptor input. In primates and mice, the density ratio of blue cone bipolar cells to blue cones is approximately 1:2 and each blue cone is contacted by more than one blue cone bipolar cell (Kouyama and Marshak, 1992; Kouyama and Marshak, 1997; Schein et al., 2004; Haverkamp et al., 2005). In rabbits, the divergence of blue cone input onto each wide-field bipolar cell depends on retinal eccentricity. In dorsal retina, where the density of blue cones is low relative to the numbers of wide-field bipolar cells, blue cones were contacted by dendrites from more than one wide-field cell. In ventral retina, multiple cones were more likely to converge onto each wide-field bipolar cell with none of them contacting more than one (Figure 7). The advantage of this arrangement could be to preserve spatial representation of the blue signal in ventral retina while allowing for better detection of the blue-cone signal in dorsal retina where the number of blue cones is lowest. [2]

Dual pigment cones [2]
A small fraction of cones in peripheral ventral rabbit retina were labeled with antibodies against both blue and red-green cone opsins. Mixed opsin cones are common in many mammalian retinas (Szél et al., 2000; Lukáts et al., 2005), but their specific function is not known. In mouse retina, the majority of cones express dual cone opsins (Applebury et al., 2000), but blue cone bipolar cells still make appropriate connections with genuine blue cones (Haverkamp et al., 2005) suggesting there exists a chromatically segregated blue channel in mouse retina. In the rabbit retina, the Biocytin wide-field cells contacted all blue cones in their dendritic field except in the ventral rim where mixed pigment cones were observed. At this eccentricity, the cell dendrites contacted a subset of blue cones suggesting that cones expressing more than one cone opsin are functionally different from genuine blue cones. The advantage of having such mixed cones is not yet understood, but may be an adaptation of diurnal mammals for better detection of predators against a blue sky background (Ahnelt and Kolb, 2000; Peichl, 2005). [2]

Function of wide-field bipolar cells [2]
The blue cone selectivity of the Biocytin wide-field bipolar cell and its structural similarity to blue cone bipolar cells in monkey, mouse and ground squirrel retinas suggests that it is involved with color processing in rabbit retina. The idea that wide-field cells would be selective for blue cones was first proposed by Famiglietti (1981). From counts of cells and measurements taken between terminal clusters on the wide-field bipolar dendrites, Famiglietti predicted that if the wide-field cells were selective for blue cones, one should see an increase in blue cone density toward the periphery. This prediction was born out by cone labeling studies showing a general increase in blue cone density toward the ventral periphery (Juliusson et al., 1994; Famiglietti and Sharpe, 1995) and a tendency for wide-field cells in ventral retina to contact more blue cones with increased distance from the visual streak. The ability of wide-field cells to make selective contacts with blue cones would allow them to deliver a spectrally segregated signal to ganglion cells that stratify in layer 5 of the inner plexiform layer. [2]

There is still some question concerning the identity of OFF-type blue cone bipolar cells in the rabbit retina. Famiglietti (1981) described two populations of wide-field bipolar cells in Golgi-stained tissue: one that stratified in sublamina b (type wb), which is most likely the Biocytin wide-field bipolar cell and a similar type that stratified in sublamina a (type wa). Wa cells possessed “extensive” axons of unspecified length and a narrow dendritic arbor that comprised between 1 and 4 primary dendrites. Each dendrite contacted a cone, including some cones that were shared with wb cells. So far, other studies of rabbit bipolar cells have not found an equivalent type (Mills and Massey, 1992; McGillem and Dacheux, 2001; MacNeil et al., 2004). The largest bipolar cell identified that stratified in sublamina a was type DAPI-Ba3 (Mills and Massey, 1992), but the dendrites were much more extensive than those of wa cells, and contacted an average of 16 cones per cell. Chiao and Liu (2006) injected a pair of OFF bipolar cells in dorsal retina that appeared to contact blue cones exclusively. The cells had narrow dendritic fields with four primary dendrites (like those of wa cells) and each dendritic terminal was aligned with blue cone opsin staining. However, the axon field diameters of these cells were relatively small compared with the axons of Biocytin wide-field bipolar cells (73 μm versus >200 μm in diameter), so it is unlikely that Chiao and Liu's cells are equivalent to type wa either. A more thorough examination of OFF bipolar cell types will be needed to clarify the morphology of the OFF blue cone bipolar cell population. [2]

Circuitry of the Biocytin wide-field bipolar cell [2]
Recordings of ganglion cells in rabbit retina have revealed the presence of blue ON/green OFF, color opponent ganglion cells (Caldwell and Daw, 1978; De Monasterio, 1978; Vaney et al., 1981). The circuitry underlying these light responses is not yet known but could be formed by the selective wiring of ON and OFF cone bipolar cells onto a bistratified ganglion cell, as has been shown in primates (Dacey and Lee, 1994; Calkins et al., 1998). A good candidate for such wiring is the G3 ganglion cell in rabbit retina (Rockhill et al., 2002). It has a bistratified dendritic arbor with the inner dendrites located at the border between strata 4 and 5, in the vicinity of the Biocytin wide-field cell axons, and an outer arbor located in stratum 2. We have shown that the dendrites of the wide-field bipolar cell selectively contact blue cones in the outer plexiform layer and its axon stratifies in layer 5 of the inner plexiform layer. With combined input from red-green cones carried by an OFF bipolar cell that stratifies in sublamina A of the inner plexiform layer, the G3 ganglion cell could be homologous to the blue–yellow cell described in primates (Calkins et al., 1998; Dacey, 2000). Alternatively, the wide-field bipolar cell could synapse with a monostratified ganglion cell that stratifies in layer 5, such as the Ib2 (Famiglietti, 2004) or G10 ganglion cell types (Rockhill et al., 2002). In recent recordings of blue cones in primate retina, Packer and colleagues have shown that blue-yellow spectral opponency originates within the blue cones themselves (Packer et al., 2007). Therefore, a bistratified ganglion cell would not be a prerequisite for generating the types of color opponent responses that have been recorded in rabbit retinal ganglion cells and the responses could be carried to the brain by a monostratified ganglion cell instead.[3]
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C16H28N4O4S
Molecular Weight
372.48
Exact Mass
372.183
Elemental Analysis
C, 51.59; H, 7.58; N, 15.04; O, 17.18; S, 8.61
CAS #
576-19-2
Related CAS #
576-19-2;
PubChem CID
83814
Appearance
White to off-white solid powder
Density
1.2±0.1 g/cm3
Boiling Point
748.0±60.0 °C at 760 mmHg
Melting Point
-245ºC (dec.)
Flash Point
406.2±32.9 °C
Vapour Pressure
0.0±5.4 mmHg at 25°C
Index of Refraction
1.548
LogP
-1.02
Hydrogen Bond Donor Count
5
Hydrogen Bond Acceptor Count
6
Rotatable Bond Count
11
Heavy Atom Count
25
Complexity
491
Defined Atom Stereocenter Count
4
SMILES
S1C([H])([H])[C@@]2([H])[C@@]([H])([C@]1([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C(N([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])[C@@]([H])(C(=O)O[H])N([H])[H])=O)N([H])C(N2[H])=O
InChi Key
BAQMYDQNMFBZNA-MNXVOIDGSA-N
InChi Code
InChI=1S/C16H28N4O4S/c17-10(15(22)23)5-3-4-8-18-13(21)7-2-1-6-12-14-11(9-25-12)19-16(24)20-14/h10-12,14H,1-9,17H2,(H,18,21)(H,22,23)(H2,19,20,24)/t10-,11-,12-,14-/m0/s1
Chemical Name
N6-(5-((3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl)pentanoyl)-L-lysine
Synonyms
Biotinyl-L-lysine; Biocytin; 576-19-2; N'-Biotinyl-L-lysine; H-Lys(biotinyl)-OH; Biotinyl-L-lysine; epsilon-N-Biotinyl-L-lysine; Ne-Biotynyl-L-lysine; N-biotinyl-L-lysine; Biocytin
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
H2O : ~50 mg/mL (~134.24 mM)
Solubility (In Vivo)
Solubility in Formulation 1: 100 mg/mL (268.47 mM) in PBS (add these co-solvents sequentially from left to right, and one by one), clear solution; with sonication (<60°C).

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.6847 mL 13.4235 mL 26.8471 mL
5 mM 0.5369 mL 2.6847 mL 5.3694 mL
10 mM 0.2685 mL 1.3424 mL 2.6847 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Biological Data
  • Studied biocytin derivatives as neuroanatomical tract tracers.[1]. Mishra A, et al. Improved neuronal tract tracing with stable biocytin-derived neuroimaging agents. ACS Chem Neurosci. 2010 Feb 17;1(2):129-38.
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