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BDP9066

Alias: BDP9066; BDP-9066; BDP 9066
Cat No.:V8872 Purity: ≥98%
BDP9066 (BDP-9066) is a novel, potent and selective MRCK (myotonic dystrophy-related Cdc42-binding kinase) inhibitor with anticancer activities.
BDP9066
BDP9066 Chemical Structure CAS No.: 2226507-04-4
Product category: New1
This product is for research use only, not for human use. We do not sell to patients.
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1mg
5mg
10mg
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Other Forms of BDP9066:

  • (R)-BDP-9066
Official Supplier of:
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Top Publications Citing lnvivochem Products
Purity & Quality Control Documentation

Purity: ≥98%

Product Description

PD: BDP9066 (BDP-9066) is a novel, potent and selective MRCK (myotonic dystrophy-related Cdc42-binding kinase) inhibitor with anticancer activities. It exhibits IC50 of 64 nM for MRCKβ in SCC12 cells, Ki values of 0.0136 nM and 0.0233 nM for MRCKα/β in house determinations, respectively. It acts by reducing substrate phosphorylation. BDP9066 leads to morphological changes in cancer cells along with inhibition of their motility and invasive character. It has therapeutic effect on skin cancer by reducing substrate phosphorylation.

Biological Activity I Assay Protocols (From Reference)
ln Vitro
BDP9066 has antiproliferative properties, with blood cancer cells exhibiting the highest level of activity. BDP9066 prevents SCC12 squamous cell carcinoma motility and invasion by inhibiting MLC phosphorylation [1].
ln Vivo
Topical treatment of BDP9066 significantly lowers phosphorylated MRCKα S1003 staining and tumor volume [1].
References

[1]. Discovery of Potent and Selective MRCK Inhibitors with Therapeutic Effect on Skin Cancer. Cancer Res. 2018 Apr 15;78(8):2096-2114.

These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C20H24N6
Molecular Weight
348.444763183594
Exact Mass
348.21
Elemental Analysis
C, 68.94; H, 6.94; N, 24.12
CAS #
2226507-04-4
Related CAS #
(R)-BDP9066;2284549-25-1
PubChem CID
132275018
Appearance
White to light brown solid powder
LogP
2.2
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
5
Rotatable Bond Count
2
Heavy Atom Count
26
Complexity
487
Defined Atom Stereocenter Count
1
SMILES
N1CCCC[C@@]21CN(C1C=CN=C3C=1C(C1C=CN=CN=1)=CN3)CCC2
InChi Key
UELSMLDRSQFVHG-FQEVSTJZSA-N
InChi Code
InChI=1S/C20H24N6/c1-2-8-25-20(6-1)7-3-11-26(13-20)17-5-10-22-19-18(17)15(12-23-19)16-4-9-21-14-24-16/h4-5,9-10,12,14,25H,1-3,6-8,11,13H2,(H,22,23)/t20-/m0/s1
Chemical Name
(6S)-8-(3-pyrimidin-4-yl-1H-pyrrolo[2,3-b]pyridin-4-yl)-1,8-diazaspiro[5.5]undecane
Synonyms
BDP9066; BDP-9066; BDP 9066
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~10 mg/mL (~28.70 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 1 mg/mL (2.87 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 10.0 mg/mL clear DMSO stock solution to 400 μL of PEG300 and mix evenly; then add 50 μL of Tween-80 to the above solution and mix evenly; then add 450 μL of normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 1 mg/mL (2.87 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 10.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.8699 mL 14.3497 mL 28.6993 mL
5 mM 0.5740 mL 2.8699 mL 5.7399 mL
10 mM 0.2870 mL 1.4350 mL 2.8699 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Biological Data
  • Inhibition of MRCK activity in vitro and in cells by BDP8900 and BDP9066. (A) Structures of 7-azaindole-3-carbonitrile hit fragment, BD8900 and BDP9066. (B) BDP8900 dose-response curves for inhibition of MRCKα, MRCKβ, ROCK1 and ROCK2 kinase activity in vitro at 1 µM ATP. (C) BDP9066 dose-response curves for inhibition of MRCKα, MRCKβ, ROCK1 and ROCK2 kinase activity in vitro at 1 µM ATP. Results shown are mean ± SD of duplicate independent replicates. (D) Cells expressing doxycycline-induced MRCKβ, ROCK1 or ROCK2 kinase domains were treated with BDP8900 at indicated concentrations for 60 minutes prior to lysis and quantitative western blotting. Inhibition of MLC2 phosphorylation by BDP8900 for each induced kinase domain. Results shown are mean ± SEM of 3-4 independent replicates. (E) Cells expressing doxycycline-induced MRCKβ, ROCK1 or ROCK2 kinase domains were treated with BDP9066 at indicated concentrations for 60 minutes prior to lysis and quantitative western blotting. Inhibition of MLC2 phosphorylation by BDP8900 for each induced kinase domain. Results shown are mean ± SEM of 3-4 independent replicates.[1].Unbekandt M, et al. Discovery of Potent and Selective MRCK Inhibitors with Therapeutic Effect on Skin Cancer. Cancer Res. 2018 Apr 15;78(8):2096-2114.
  • Detailed selectivity profiles for BDP8900 and BDP9066. (A) Percentage kinase inhibition by 1 µM BDP8900 and BDP9066 were ranked and displayed by heat map. (B) Plot of inhibition by BDP8900 and BDP9066, kinases selected for detailed dose-response analysis indicated with red dot. ROCK1 was selected to additionally represent ROCK2 (black dot). Dotted line represents Deming regression (slope deviation from zero, p<0.0001). (C) BDP8900 dose-response curves for inhibition of indicated kinases in vitro. Results shown are mean ± SD of duplicate independent replicates. (D) BDP9066 dose-response curves for inhibition of indicated kinases in vitro. Results shown are mean ± SD of duplicate independent replicates. (E) BDP8900 and BDP9066 dose-response curves for competitive inhibition of tracer binding to DMPK in vitro, with calculated Kd values. Results shown are mean ± SD of duplicate independent replicates. (F) Natural log Ki or Kd (nM) values of BDP8099 and BDP9066 determined using in-house optimized assay conditions (red dots), by outsourced assays (black dots) or competition binding assay (purple dot). Dashed line represents Deming regression (slope deviation from zero, p<0.0001).[1].Unbekandt M, et al. Discovery of Potent and Selective MRCK Inhibitors with Therapeutic Effect on Skin Cancer. Cancer Res. 2018 Apr 15;78(8):2096-2114.
  • Structure of MRCKβ in complex with BDP8900 and BDP9066. (A) BDP8900 or (B) BDP9066 bound to the MRCKβ ATP-binding site in stereo views. Protein residues (grey) are labelled with the single-letter amino acid code and residue number, selected water molecules are indicated by red spheres. Ligands are shown in purple with σA-weighted |Fo|-|Fc|,ϕc electron density maps calculated prior to the initial inclusion of the ligand in refinement contoured at 3.0σ (dark blue). Potential hydrogen bonds are highlighted by dotted black lines. (C) Detailed view of the BDP9066 spiro moiety. The ligand is shown in cyan with a semitransparent surface. (D) Comparison of the binding modes of BDP9066 (cyan) and BDP5290 (blue, PDB ID 4UAL). Protein residues, pocket waters and potential hydrogen bonds are shown as before and colored to match the ligand.[1].Unbekandt M, et al. Discovery of Potent and Selective MRCK Inhibitors with Therapeutic Effect on Skin Cancer. Cancer Res. 2018 Apr 15;78(8):2096-2114.
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