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Atpenin A5

Cat No.:V5544 Purity: ≥98%
Atpenin A5 is a potent and specific complex II inhibitor (antagonist) with IC50 of ~10 nM, and is a potent mKATP channel agonist and cardioprotective agent.
Atpenin A5
Atpenin A5 Chemical Structure CAS No.: 119509-24-9
Product category: New15
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
Atpenin A5 is a potent and specific complex II inhibitor (antagonist) with IC50 of ~10 nM, and is a potent mKATP channel agonist and cardioprotective agent.
Biological Activity I Assay Protocols (From Reference)
Targets
Mitochondrial Complex II (succinate-ubiquinone oxidoreductase) inhibitor (IC₅₀ ~10 nM) [1]
Mitochondrial ATP-sensitive potassium (mK_ATP) channel activator (effective concentration: 1 nM) [1]
ln Vitro
Atpenin A5 has IC50 values of 8.3, 9.3, and 8.5 nM, respectively, for its cytostatic effects on cardiomyocytes, mitochondria, and mitochondrial particles (SMP). Manhattan complex II chip Atpenin A5 (AA5) is a powerful chip. In isolated cardiomyocytes, atpenin A5 (1 nM) mimics reperfusion (IR) injury and inhibits mKATP channel activation [1].
Atpenin A5 (AA5) is a potent and specific inhibitor of mitochondrial complex II. The IC₅₀ values for complex II inhibition were determined to be 8.3 nM in submitochondrial particles (SMPs), 9.3 nM in isolated rat heart mitochondria, and 8.5 nM in isolated rat cardiomyocytes. [1]
Atpenin A5 (at 1 nM concentration) activated the mitochondrial ATP-sensitive potassium (mK_ATP) channel in isolated rat heart mitochondria, as measured by a potassium uptake and swelling assay. This activation was sensitive to the mK_ATP channel antagonists 5-hydroxydecanoate (5HD) and glyburide. [1]
The dose-response relationship for mK_ATP channel opening by Atpenin A5 showed maximal activation at 1 nM when mitochondria were respiring on complex I-linked substrates (glutamate/malate). When using complex II-linked substrate (succinate), higher concentrations of AA5 (>1 nM) diminished the channel-opening effect, likely due to complex II inhibition limiting membrane potential. [1]
In isolated adult rat cardiomyocytes subjected to simulated ischemia-reperfusion (SIR) injury, pretreatment with Atpenin A5 protected cells in a dose-dependent manner, with optimal protection observed at a concentration of 1 nM. This protective effect was blocked by co-treatment with the mK_ATP channel antagonists 5HD (300 µM) or glyburide (2 µM). [1]
Atpenin A5 (1 nM) induced mK_ATP channel opening and mitochondrial swelling even in mitochondria respiring on ascorbate plus TMPD (which feeds electrons directly into complex IV), indicating that its effect on the mK_ATP channel is not merely a downstream consequence of complex I or II inhibition. [1]
A very high concentration of Atpenin A5 (1 µM) did not inhibit the respiration of mitochondria in the presence of glutamate plus malate (complex I-linked substrates). [1]
ln Vivo
In the postpartum heart following myocardial infarction (MI), inhibition of succinate dehydrogenase by Atpenin A5 promotes cardiomyocyte mitosis and regeneration; in contrast to heart disease, the myocardium in the myocardial infarction area injected with Atpenin A5 becomes thicker and scars are significantly reduced [2]. Atpenin A5 is a valid benchmark for succinate dehydrogenase (SDH).
Injection of Atpenin A5 (100 μg/kg daily) starting at postnatal day 7 (P7) in neonatal mice following myocardial infarction (MI) significantly increased the number of cardiomyocytes undergoing mitosis and cytokinesis, as evidenced by increased pH3 and Aurora B staining compared to controls [2].
Treatment with Atpenin A5 also promoted myocardial regeneration, with reduced fibrotic scar size and restoration of cardiac function (ejection fraction, fractional shortening, left ventricular dimensions) at 21 days post-MI [2].
These effects were similar to those observed with malonate, suggesting that SDH inhibition is the central mechanism [2]
.
Enzyme Assay
The enzymatic activity of mitochondrial complex II (succinate dehydrogenase) was measured spectrophotometrically. The assay monitored the thenoyltrifluoroacetone-sensitive rate of succinate-driven, coenzyme Q₂-linked reduction of the dye dichlorophenolindophenol (DCPIP). Activity was measured in submitochondrial particles (SMPs), isolated mitochondria, and isolated cardiomyocytes to determine the inhibitory potency (IC₅₀) of Atpenin A5. [1]
The activity of the mitochondrial ATP-sensitive potassium (mK_ATP) channel was monitored using a swelling assay. Isolated rat heart mitochondria were suspended in a potassium-based swelling buffer containing oligomycin (to prevent state 3 respiration). Channel activity was assessed by measuring the decrease in light scattering (absorbance at 520 nm) caused by potassium uptake and consequent mitochondrial swelling. The assay validates mK_ATP activity through a specific pharmacological profile: swelling in K⁺ media, inhibition by ATP, reversal of ATP inhibition by mK_ATP agonists (e.g., diazoxide or AA5), and blockade of agonist effects by antagonists (e.g., 5HD or glyburide). No such effects are observed in sodium-based control media. [1]
Cell Assay
Ventricular cardiomyocytes were isolated from adult male Sprague-Dawley rats by perfusion with collagenase. For simulated ischemia-reperfusion (SIR) experiments, approximately 5 x 10⁵ cells were incubated in Krebs-Henseleit buffer with 2% BSA. Cells were subjected to 1 hour of anoxia (95% N₂ / 5% CO₂, glucose-free buffer, pH 6.5) followed by 30 minutes of reoxygenation (95% O₂ / 5% CO₂, glucose-replete buffer, pH 7.4). To test for protection, Atpenin A5 (at concentrations ranging from 0.1 to 100 nM) or other compounds were added to the incubation medium 20 minutes prior to the onset of simulated ischemia. At the end of the reoxygenation period, cell viability was determined by Trypan blue exclusion. [1]
Animal Protocol
Animal/Disease Models: Neonatal mice [2]
Doses: 100 μg/kg
Route of Administration: Daily injection
Experimental Results: Myocardial thickness in the infarct area was Dramatically increased and scar size was diminished compared with the control group.
Isolated rat hearts from male Sprague-Dawley rats were perfused in Langendorff (retrograde) mode with Krebs-Henseleit buffer at constant flow. After a 20-minute equilibration period, hearts were subjected to global ischemia (25 minutes) followed by reperfusion (120 minutes). To test the cardioprotective effect, Atpenin A5 was dissolved in DMSO and infused into the perfusion cannula for 20 minutes prior to ischemia, at a final concentration in the perfusate of 50 nM. This was followed by a 30-second washout period before the onset of ischemia. In some groups, the mK_ATP antagonist 5-hydroxydecanoate (5HD, 300 µM) was co-infused with Atpenin A5 starting from the beginning of the protocol. At the end of reperfusion, hearts were sliced, stained with 1% triphenyltetrazolium chloride (TTC) to differentiate infarcted (white) from viable (red) tissue, and infarct size was quantified. Left ventricular function (rate-pressure product) was monitored throughout the protocol via a balloon inserted into the left ventricle. [1]
References

[1]. The complex II inhibitor atpenin A5 protects against cardiac ischemia-reperfusion injury via activation of mitochondrial KATP channels. Basic Res Cardiol. 2009 Mar;104(2):121-9.

[2]. Malonate Promotes Adult Cardiomyocyte Proliferation and Heart Regeneration. Circulation. 2021 May 18;143(20):1973-1986.

Additional Infomation
Ateptin A5 has been reported in Streptomyces and there is relevant data. Ateptin A5 is considered to be the most effective mK_ATP channel opener discovered to date, with an effective concentration of 1 nM, which is about 10,000 times more potent than the classic opener diazoxide. [1] The cardioprotective mechanism of ateptin A5 appears to depend on the activation of mK_ATP channels rather than the inhibition of complex II because: (1) its optimal protective concentration (1 nM) is an order of magnitude lower than its inhibitory IC₅₀ (~10 nM) on complex II; and (2) its protective effect in cardiomyocytes and isolated hearts can be blocked by mK_ATP channel antagonists (5HD and glibenclamide). [1] This study suggests that, given the significant pharmacological overlap between the complex II protein and the mK_ATP channel complex, and the fact that the specific complex II inhibitor, Atpenin A5, is also a potent mK_ATP channel opener, the complex II protein may play a structural or regulatory role in the mK_ATP channel complex. [1] Administration of Atpenin A5 (50 nM) to isolated perfused hearts immediately caused a transient decrease in coronary perfusion pressure (vasodilation) and a reduction in the heart rate-blood pressure product, similar to the effects observed in ischemic preconditioning. [1] The literature discussion points out that although Atpenin A5 has shown potential as a cardioprotective agent in vitro, its potential clinical application may be limited by long-term neurodegenerative side effects, as observed with long-term in vivo use of other mitochondrial complex inhibitors (such as malonic acid or 3-nitropropionic acid). Cardiac-specific drugs may need to be developed to circumvent these effects. [1]
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C15H21NO5CL2
Molecular Weight
366.23694
Exact Mass
365.079
CAS #
119509-24-9
Related CAS #
119509-24-9;
PubChem CID
54676868
Appearance
White to off-white solid powder
Density
1.3±0.1 g/cm3
Boiling Point
532.6±50.0 °C at 760 mmHg
Flash Point
275.9±30.1 °C
Vapour Pressure
0.0±3.2 mmHg at 25°C
Index of Refraction
1.534
LogP
-0.8
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
5
Rotatable Bond Count
8
Heavy Atom Count
23
Complexity
544
Defined Atom Stereocenter Count
3
SMILES
C[C@@H](C[C@H](C)C(=O)C1=C(C(=C(NC1=O)OC)OC)O)[C@H](CCl)Cl
InChi Key
OVULNOOPECCZRG-CIUDSAMLSA-N
InChi Code
InChI=1S/C15H21Cl2NO5/c1-7(9(17)6-16)5-8(2)11(19)10-12(20)13(22-3)15(23-4)18-14(10)21/h7-9H,5-6H2,1-4H3,(H2,18,20,21)/t7-,8-,9-/m0/s1
Chemical Name
3-[(2S,4S,5R)-5,6-dichloro-2,4-dimethylhexanoyl]-4-hydroxy-5,6-dimethoxy-1H-pyridin-2-one
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: (1). This product requires protection from light (avoid light exposure) during transportation and storage.  (2). Please store this product in a sealed and protected environment (e.g. under nitrogen), avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~100 mg/mL (~273.04 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (6.83 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.5 mg/mL (6.83 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 2.5 mg/mL (6.83 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.7304 mL 13.6522 mL 27.3045 mL
5 mM 0.5461 mL 2.7304 mL 5.4609 mL
10 mM 0.2730 mL 1.3652 mL 2.7304 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
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Biological Data
  • Inhibition of complex II activity by AA5 in SMPs, isolated mitochondria, and cardiomyocytes Complex II activity was measured as detailed in the methods. Data are means ± SEM (N=4–6) and are expressed as a percentage of the appropriate control values: 162±4 nmol/min/mg protein in SMPs, 98±10 nmol/min/mg protein in mitochondria, and 439±49 nmol/min/104 cardiomyocytes. Inset: structure of atpenin A5.[1]. Andrew P Wojtovich, et al. The complex II inhibitor atpenin A5 protects against cardiac ischemia-reperfusion injury via activation of mitochondrial KATP channels. Basic Res Cardiol. 2009 Mar;104(2):121-9.
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