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Amino-PEG3-acid

Cat No.:V11104 Purity: ≥98%
Amino-PEG3-acid is a PEG analogue containing an amino group with a terminal carboxylic acid.
Amino-PEG3-acid
Amino-PEG3-acid Chemical Structure CAS No.: 784105-33-5
Product category: PROTAC Linkers
This product is for research use only, not for human use. We do not sell to patients.
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Purity & Quality Control Documentation

Purity: ≥98%

Product Description
Amino-PEG3-acid is a PEG analogue containing an amino group with a terminal carboxylic acid. The amino group is reactive with carboxylic acids, activated NHS esters, carbonyls (ketone, aldehyde) etc. The terminal carboxylic acid can be reacted with primary amine groups in the presence of activators (e.g. EDC, or DCC) to form a stable amide bond. PEG Linkers may be useful in the development of antibody drug conjugates and drug delivery methods.
Amino-PEG3-acid (CAS# 784105-33-5) is a PEG analogue containing an amino group with a terminal carboxylic acid. Its molecular formula is C₉H₁₉NO₅ and its molecular weight is 221.3 g/mol. The amino group is reactive with carboxylic acids, activated NHS esters, and carbonyls. The terminal carboxylic acid can react with primary amines to form stable amide bonds. The hydrophilic PEG spacer increases solubility in aqueous media.
Biological Activity I Assay Protocols (From Reference)
Targets
As a linker, Amino-PEG3-acid does not have a traditional biological target. It is a chemical tool used in the synthesis of PROTACs, ADCs, and other bioconjugates. Its role is to connect two functional molecules. The amino and carboxylic acid groups provide orthogonal handles for conjugation. The PEG spacer provides flexibility and solubility.
ln Vitro
An ADC cytotoxin is connected to an antibody by use of an ADC linker to form an ADC. Two distinct ligands, one for the E3 ubiquitin ligase and the other for the target protein, are present in PROTAC and are joined by a linker. PROTAC targets and selectively degrades target proteins by means of the intracellular ubiquitin-proteasome system.
In vitro, Amino-PEG3-acid is used as a linker in the synthesis of PROTACs and ADCs. Its utility is demonstrated by the successful creation of these bioconjugates. The linker's hydrophilic PEG3 spacer enhances the aqueous solubility of the final molecule, which is particularly important for hydrophobic drugs. The non-cleavable nature of the linker provides stability.
ln Vivo
In vivo applications of Amino-PEG3-acid are realized through the PROTACs or ADCs it helps construct. These conjugates are designed to have therapeutic effects, such as targeted protein degradation or cancer cell killing. The linker's stability and hydrophilicity influence the conjugate's pharmacokinetics and efficacy. The compound is a research tool for developing biopharmaceuticals.
Enzyme Assay
In vitro assays for Amino-PEG3-acid typically involve confirming its structure and purity by NMR and mass spectrometry. Its reactivity, such as amide bond formation, can be demonstrated by synthesizing a small molecule conjugate. The formation of the amide bond can be confirmed by HPLC or mass spectrometry. These protocols are for research purposes only.
Cell Assay
In vitro cell-based assays for Amino-PEG3-acid are performed on the final conjugate, not the linker alone. For PROTACs, target protein degradation is assessed by Western blot. For ADCs, cytotoxicity is measured using cell viability assays on target antigen-expressing cells. The linker's contribution to the conjugate's solubility and cell permeability can be evaluated. Standard cell culture conditions are used.
Animal Protocol
In vivo animal studies for Amino-PEG3-acid are conducted with the final conjugate. Xenograft mouse models are used to evaluate antitumor efficacy for ADCs or PROTACs targeting cancer proteins. The conjugate is administered intravenously or intraperitoneally. Tumor growth inhibition is monitored, and pharmacodynamic studies assess target engagement or degradation. Pharmacokinetic studies evaluate the conjugate's half-life and distribution. All procedures must comply with institutional animal care guidelines.
ADME/Pharmacokinetics
The pharmacokinetic properties of Amino-PEG3-acid are not characterized independently. As a PEG-based linker, it contributes to the overall properties of the conjugate, such as solubility and stability. The PEG3 spacer can help reduce renal clearance and improve the conjugate's half-life. The compound is for research use only.
Toxicity/Toxicokinetics
The toxicity profile of Amino-PEG3-acid is evaluated as part of the final conjugate. The linker itself is designed to be non-toxic. The toxicity of the conjugate is primarily determined by the payload and the target. The compound is a research chemical, and its safety for human use has not been established.
References

[1]. Anti-her2 biparatopic antibody-drug conjugates and methods of use. WO2019173911A1.

Additional Infomation
Additional information: Amino-PEG3-acid has the CAS number 784105-33-5. Its molecular formula is C₉H₁₉NO₅. It is a PEG-based linker containing an amino and a carboxylic acid group. It is used in PROTAC and ADC synthesis. This product is for research use only and is not approved for clinical or therapeutic applications.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C9H19NO5
Molecular Weight
221.2509
Exact Mass
221.126
CAS #
784105-33-5
Related CAS #
784105-33-5;
PubChem CID
11608245
Appearance
White to light yellow liquid
LogP
0.169
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
6
Rotatable Bond Count
11
Heavy Atom Count
15
Complexity
153
Defined Atom Stereocenter Count
0
SMILES
O(C([H])([H])C([H])([H])OC([H])([H])C([H])([H])N([H])[H])C([H])([H])C([H])([H])OC([H])([H])C([H])([H])C(=O)O[H]
InChi Key
XUQZKSCQPMNDEY-UHFFFAOYSA-N
InChi Code
InChI=1S/C9H19NO5/c10-2-4-14-6-8-15-7-5-13-3-1-9(11)12/h1-8,10H2,(H,11,12)
Chemical Name
3-[2-[2-(2-aminoethoxy)ethoxy]ethoxy]propanoic acid
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: Please store this product in a sealed and protected environment, avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~100 mg/mL (~451.98 mM)
DMF : 3.33 mg/mL (~15.05 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (11.30 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.5 mg/mL (11.30 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 2.5 mg/mL (11.30 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 4.5198 mL 22.5989 mL 45.1977 mL
5 mM 0.9040 mL 4.5198 mL 9.0395 mL
10 mM 0.4520 mL 2.2599 mL 4.5198 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
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Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

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  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Clinical Trial Information
NCT Number Recruitment interventions Conditions Sponsor/Collaborators Start Date Phases
NCT03643068 Completed Drug: KSP-QRH-E3-IRDye800 (Peptide 919288G), 0.6 mg
Drug: KSP-QRH-E3-IRDye800 (Peptide 919288G), 1.8 mg
Healthy Adults University of Michigan 2018-08-22 Phase 1
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