| Size | Price | Stock | Qty |
|---|---|---|---|
| 250mg |
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| 500mg |
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| Other Sizes |
| Targets |
5-Me-dC(Ac) amidite does not have a specific biological target itself. It is a building block for oligonucleotide synthesis. It is used to incorporate 5-methylcytosine, a naturally occurring modified base, into synthetic oligonucleotides. The 5-methyl group can affect the structure, stability, and interactions of the oligonucleotide with proteins, such as transcription factors and DNA methyltransferases.
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|---|---|
| ln Vitro |
In vitro, 5-Me-dC(Ac) amidite is used as a monomer in the synthesis of oligonucleotides. The resulting modified oligonucleotides contain 5-methylcytosine, which can affect their structure, stability, and interactions with proteins.
|
| ln Vivo |
In vivo, 5-Me-dC(Ac) amidite is not used as a therapeutic agent itself. However, oligonucleotides synthesized using this building block may be used in vivo for various applications, including therapeutic and diagnostic purposes.
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| Enzyme Assay |
In vitro non-cell-based assays for 5-Me-dC(Ac) amidite typically involve its use in standard oligonucleotide synthesis protocols. The compound is coupled to a growing oligonucleotide chain, and the purity and identity of the synthesized oligonucleotides are confirmed by HPLC and mass spectrometry.
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| Cell Assay |
In vitro cell-based assays are not typically performed with 5-Me-dC(Ac) amidite itself. However, the modified oligonucleotides synthesized from it are tested in cell-based assays to evaluate their stability, function, and interactions with cellular proteins.
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| Animal Protocol |
In vivo animal experiments are not conducted with 5-Me-dC(Ac) amidite directly. Instead, modified oligonucleotides synthesized using this building block are administered to animal models to study their pharmacokinetics, pharmacodynamics, and therapeutic efficacy.
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| ADME/Pharmacokinetics |
5-Me-dC(Ac) amidite has a molecular weight of 785.86 g/mol and the formula C42H52N5O8P. It is stored under appropriate conditions.
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| Toxicity/Toxicokinetics |
Specific toxicological data for 5-Me-dC(Ac) amidite are not provided, as it is a chemical building block.
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| References | |
| Additional Infomation |
5-Me-dC(Ac) amidite is a modified phosphoramidite used in oligonucleotide synthesis. It is used to introduce 5-methylcytosine into DNA or RNA. It is intended for research use.
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| Molecular Formula |
C42H52N5O8P
|
|---|---|
| Molecular Weight |
785.864751815796
|
| Exact Mass |
785.355
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| CAS # |
1873306-74-1
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| PubChem CID |
117064363
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| Appearance |
White to off-white solid powder
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| LogP |
8.32
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| Hydrogen Bond Donor Count |
1
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| Hydrogen Bond Acceptor Count |
10
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| Rotatable Bond Count |
18
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| Heavy Atom Count |
56
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| Complexity |
1360
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| Defined Atom Stereocenter Count |
3
|
| SMILES |
CC1=CN(C(=O)N=C1NC(=O)C)[C@H]2C[C@@H]([C@H](O2)COC(C3=CC=CC=C3)(C4=CC=C(C=C4)OC)C5=CC=C(C=C5)OC)OP(N(C(C)C)C(C)C)OCCC#N
|
| InChi Key |
YFUQEQDYBKCNTE-CMFYRTQUSA-N
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| InChi Code |
InChI=1S/C42H52N5O8P/c1-28(2)47(29(3)4)56(53-24-12-23-43)55-37-25-39(46-26-30(5)40(44-31(6)48)45-41(46)49)54-38(37)27-52-42(32-13-10-9-11-14-32,33-15-19-35(50-7)20-16-33)34-17-21-36(51-8)22-18-34/h9-11,13-22,26,28-29,37-39H,12,24-25,27H2,1-8H3,(H,44,45,48,49)/t37-,38+,39+,56?/m0/s1
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| Chemical Name |
N-[1-[(2R,4S,5R)-5-[[bis(4-methoxyphenyl)-phenylmethoxy]methyl]-4-[2-cyanoethoxy-[di(propan-2-yl)amino]phosphanyl]oxyoxolan-2-yl]-5-methyl-2-oxopyrimidin-4-yl]acetamide
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| HS Tariff Code |
2934.99.9001
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| Storage |
Powder -20°C 3 years 4°C 2 years In solvent -80°C 6 months -20°C 1 month Note: This product requires protection from light (avoid light exposure) during transportation and storage. |
| Shipping Condition |
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
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| Solubility (In Vitro) |
DMSO : ~100 mg/mL (~127.25 mM)
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|---|---|
| Solubility (In Vivo) |
Solubility in Formulation 1: ≥ 2.5 mg/mL (3.18 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly. (Please use freshly prepared in vivo formulations for optimal results.) |
| Preparing Stock Solutions | 1 mg | 5 mg | 10 mg | |
| 1 mM | 1.2725 mL | 6.3625 mL | 12.7249 mL | |
| 5 mM | 0.2545 mL | 1.2725 mL | 2.5450 mL | |
| 10 mM | 0.1272 mL | 0.6362 mL | 1.2725 mL |
*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.
Calculation results
Working concentration： mg/mL；
Method for preparing DMSO stock solution： mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.
Method for preparing in vivo formulation:：Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O，mix and clarify.
(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
(2) Be sure to add the solvent(s) in order.
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