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5(6)-CFDA

Alias: 5(6)-Carboxyfluorescein diacetate; 124387-19-5; CFDA; 5-(6)-Carboxyfluorescein diacetate;CFDA; Spiro[isobenzofuran-1(3H),9'-[9H]xanthene]-ar-carboxylic acid, 3',6'-bis(acetyloxy)-3-oxo-; 3',6'-diacetyloxy-1-oxospiro[2-benzofuran-3,9'-xanthene]-4-carboxylic acid;3',6'-diacetyloxy-1-oxospiro[2-benzofuran-3,9'-xanthene]-5-carboxylic acid; 5-6-CFDA; DTXSID70657464;
Cat No.:V33446 Purity: ≥98%
5(6)-CFDA is a common aliphatic fluorescein series.
5(6)-CFDA
5(6)-CFDA Chemical Structure CAS No.: 124387-19-5
Product category: New2
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
50mg
100mg
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Other Sizes

Other Forms of 5(6)-CFDA:

  • 5-CFDA-AM
  • 5-CFDA
  • 6-CFDA
Official Supplier of:
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Top Publications Citing lnvivochem Products
Product Description
5(6)-CFDA is a common aliphatic fluorescein series. CFDA can diffuse freely within cells and is hydrolyzed by intracellular non-specific lipases to generate carboxyfluorescein (CF). The CF-containing moiety carries an extra negative charge compared to the fluorescein dye, allowing it to be better retained in cells.
Biological Activity I Assay Protocols (From Reference)
Targets
Fluorescent Dye
ln Vitro
Preparation of 5(6)-CFDA Working Solution
1. Preparation of Stock Solution
Dissolve 1 mg of 5(6)-CFDA in 0.21 mL of DMSO to obtain a 10 mM 5(6)-CFDA solution.
Note: It is recommended to store the stock solution protected from light at -20°C or -80°C, avoiding repeated freeze-thaw cycles.
2. 5(6)-CFDA Working Solution
Dilute the stock solution with serum-free cell culture medium or PBS to prepare a 1-10 μM 5(6)-CFDA working solution.
Note: Adjust the concentration of the 5(6)-CFDA working solution according to experimental requirements.

Cell Staining
1. Cell Preparation:
• Suspension cells: Centrifuge at 1000 g for 3-5 minutes at 4°C, then discard the supernatant. Wash twice with PBS, 5 minutes each time.
• Adherent cells: Discard the cell culture medium, dissociate cells with trypsin to form a single-cell suspension. Centrifuge at 1000 g for 3-5 minutes at 4°C, then discard the supernatant. Wash twice with PBS, 5 minutes each time.
2. Add 1 mL of 5(6)-CFDA working solution and incubate at room temperature for 30 minutes.
3. Centrifuge at 400 g for 3-4 minutes at 4°C and discard the supernatant.
4. Wash twice with PBS, 5 minutes each time.
5. Resuspend the cells in serum-free cell culture medium or PBS, then analyze by fluorescence microscopy or flow cytometry.

Precautions
1. The stock solution should be stored protected from light at -20°C or -80°C, avoiding repeated freeze-thaw cycles.
2. Adjust the concentration of the 5(6)-CFDA working solution according to experimental requirements.
3. This product is intended for research use only and is not for drug, household, or other applications.
4. For your safety and health, wear a lab coat and disposable gloves during operation.
References

[1]. A novel nonradioactive CFDA assay to monitor the cellular immune response in myeloid leukemia. Immunobiology. 2013 Apr;218(4):548-53.

[2]. Assessment of fluorescein-based fluorescent dyes for tracing Neotyphodium endophytes in planta. Mycologia. 2013 Jan-Feb;105(1):221-9.

[3]. Bone marrow-derived endothelial progenitor cells are involved in aneurysm repair in rabbits. J Clin Neurosci. 2012 Sep;19(9):1283-6.

Additional Infomation
Endothelial progenitor cells (EPCs) are thought to be involved in aneurysm repair and remodeling. This study aimed to test this hypothesis and, if true, investigate how EPCs promote aneurysm repair in an elastase-induced rabbit carotid aneurysm model. Rabbits were randomly assigned to either the intracarotid EPC infusion group (ISCT group, n=5) or the intravenous EPC infusion group (IVT group, n=5). Autologous EPCs were double-labeled with Hoechst 33342 and 5,6-carboxyfluorescein diacetate succinimide, and then injected into the carotid artery (ISCT group) or the marginal auricular vein (IVT group), respectively. Three weeks later, the location, adhesion, and growth of labeled cells within the aneurysm were observed to detect signs of aneurysm repair. In the ISCT group, labeled EPCs were detected in the neointima of all five aneurysms; in the IVT group, labeled EPCs were detected in the neointima of three of the five aneurysms. However, no endothelial cell proliferation was observed in the neointima of either group of aneurysms. These results indicate that bone marrow-derived EPCs are involved in the repair process of aneurysms in this rabbit model. [1]
The ability of fluorescent dyes to stain live hyphae of two fungi—Neotyphodium lolii and Festuca arundinacea—was evaluated. Fluorescein-based fluorescent dyes: This study evaluated the staining effects of fluorescein diacetate (FDA), 5(6)-carboxyfluorescein diacetate (CFDA), 5-chloromethylfluorescein diacetate (CMFDA), and chitin-binding dye Calcofluor M2R on endophytic hyphae in sterile fungal cultures in vitro and in plants (including epidermal leaf sheath peels, nodes, ovaries, embryos, and meristems). CMFDA showed the highest staining intensity on fungal hyphae and exhibited excellent contrast in plants compared to plant cells. Compared to other dyes, CMFDA was least affected by photobleaching and continued to fluoresce for up to 2 hours after initial excitation. None of the fluorescent dyes could stain fungal hyphae in seeds. [2]
Endothelial progenitor cells (EPCs) are thought to be involved in aneurysm repair and remodeling. This study aimed to verify this hypothesis and explore how endothelial progenitor cells (EPCs) promote aneurysm repair in an elastase-induced rabbit carotid aneurysm model. Rabbits were randomly divided into two groups: the intracarotid EPC infusion group (ISCT group, n=5) and the intravenous EPC infusion group (IVT group, n=5). Autologous EPCs were double-labeled with Hoechst 33342 and 5,6-carboxyfluorescein diacetate succinimide and injected into the carotid artery (ISCT group) or the marginal auricular vein (IVT group), respectively. Three weeks later, the location, adhesion, and growth of labeled cells in the aneurysm were observed to detect signs of aneurysm repair. In the ISCT group, labeled EPCs were detected in the neointima of all 5 aneurysms; in the IVT group, labeled EPCs were detected in the neointima of 3 of the 5 aneurysms. However, no endothelial cell proliferation was observed in the neointima of either group of aneurysms. These results indicate that bone marrow-derived EPCs are involved in the aneurysm repair process in this rabbit model. [3]
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
2[C25H16O9]
Molecular Weight
920.778280000001
Exact Mass
920.158
CAS #
124387-19-5
Related CAS #
5-CFDA;79955-27-4;6-CFDA;3348-03-6
PubChem CID
44119974
Appearance
White to yellow solid powder
LogP
7.606
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
18
Rotatable Bond Count
10
Heavy Atom Count
68
Complexity
1660
Defined Atom Stereocenter Count
0
SMILES
CC(OC1=CC=C2C(OC3=C(C=CC(OC(C)=O)=C3)C24C5=CC(C(O)=O)=CC=C5C(O4)=O)=C1)=O.CC(OC6=CC=C7C(OC8=C(C=CC(OC(C)=O)=C8)C79C%10=CC=C(C(O)=O)C=C%10C(O9)=O)=C6)=O
InChi Key
SWRGCNMDGRMQGB-UHFFFAOYSA-N
InChi Code
InChI=1S/2C25H16O9/c1-12(26)31-15-4-7-18-21(10-15)33-22-11-16(32-13(2)27)5-8-19(22)25(18)20-9-14(23(28)29)3-6-17(20)24(30)34-25;1-12(26)31-14-6-8-18-20(10-14)33-21-11-15(32-13(2)27)7-9-19(21)25(18)22-16(23(28)29)4-3-5-17(22)24(30)34-25/h2*3-11H,1-2H3,(H,28,29)
Chemical Name
3',6'-diacetyloxy-1-oxospiro[2-benzofuran-3,9'-xanthene]-4-carboxylic acid;3',6'-diacetyloxy-1-oxospiro[2-benzofuran-3,9'-xanthene]-5-carboxylic acid
Synonyms
5(6)-Carboxyfluorescein diacetate; 124387-19-5; CFDA; 5-(6)-Carboxyfluorescein diacetate;CFDA; Spiro[isobenzofuran-1(3H),9'-[9H]xanthene]-ar-carboxylic acid, 3',6'-bis(acetyloxy)-3-oxo-; 3',6'-diacetyloxy-1-oxospiro[2-benzofuran-3,9'-xanthene]-4-carboxylic acid;3',6'-diacetyloxy-1-oxospiro[2-benzofuran-3,9'-xanthene]-5-carboxylic acid; 5-6-CFDA; DTXSID70657464;
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: This product requires protection from light (avoid light exposure) during transportation and storage.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~125 mg/mL (~271.51 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.08 mg/mL (4.52 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 20.8 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.08 mg/mL (4.52 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 20.8 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.0860 mL 5.4302 mL 10.8604 mL
5 mM 0.2172 mL 1.0860 mL 2.1721 mL
10 mM 0.1086 mL 0.5430 mL 1.0860 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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