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3-Azidopropanol

Cat No.:V53020 Purity: ≥98%
3-Azidopropanol is a reagent for click chemistry bearing an azide (N3) moiety.
3-Azidopropanol
3-Azidopropanol Chemical Structure CAS No.: 72320-38-8
Product category: ADC Linker
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
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250mg
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1g
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Product Description
3-Azidopropanol is a reagent for click chemistry bearing an azide (N3) moiety. Click chemistry has great application potential in the conjugation between nucleic acids, lipids, proteins and other molecules and has been applied in various research fields due to its beneficial properties such as high yield, high specificity and simplicity.
3-Azidopropanol (CAS# 72320-38-8) is a click chemistry reagent containing an azide functional group and a primary alcohol. With a molecular formula of C3H7N3O and molecular weight of 101.11, this compound is used as a building block for the synthesis of various bioconjugates and functional materials. The azide group enables copper-catalyzed azide-alkyne cycloaddition (CuAAc) or strain-promoted azide-alkyne cycloaddition (SPAAC) with alkyne-functionalized molecules. The primary alcohol provides a handle for further functionalization through esterification or etherification reactions.
Biological Activity I Assay Protocols (From Reference)
Targets
3-Azidopropanol does not have a specific biological target itself but serves as a chemical reagent for bioconjugation and material functionalization. The azide group enables click chemistry reactions with alkyne-functionalized molecules through copper-catalyzed azide-alkyne cycloaddition (CuAAc) or strain-promoted azide-alkyne cycloaddition (SPAAC). The primary alcohol can be used for further functionalization or conjugation. This compound is widely used in the synthesis of drug delivery systems, biomaterials, and chemical biology probes.
ln Vitro
The in vitro activity of 3-Azidopropanol is assessed by its ability to participate in click chemistry reactions. The efficiency of azide-alkyne cycloaddition is evaluated by HPLC or LC-MS analysis of the conjugation products. The compound's ability to form stable conjugates with alkyne-functionalized molecules is assessed by mass spectrometry or NMR spectroscopy. Reaction kinetics and biocompatibility are also evaluated in the presence of biological molecules or cells for bioconjugation applications.
ln Vivo
In vivo studies for 3-Azidopropanol are typically conducted on the complete conjugates formed using this click chemistry reagent rather than the compound itself. These conjugates are evaluated in animal models for their pharmacokinetic properties, biodistribution, and therapeutic efficacy in applications such as drug delivery or imaging. The azide-alkyne click chemistry enables bioorthogonal labeling and conjugation without interfering with biological processes.
Enzyme Assay
For click chemistry conjugation, 3-Azidopropanol is dissolved in appropriate solvent and reacted with alkyne-functionalized molecules in the presence of copper catalyst (CuAAc) or without catalyst (SPAAC with strained alkynes). The reaction is typically conducted at room temperature or 37°C for 2-24 hours. The extent of conjugation is monitored by HPLC, LC-MS, or TLC. The product is purified by column chromatography or preparative HPLC and characterized by NMR and mass spectrometry.
Cell Assay
For cellular labeling studies, cells are first labeled with alkyne-containing probes and then treated with 3-Azidopropanol derivatives (e.g., fluorescent azide conjugates). Labeling efficiency is assessed by flow cytometry or fluorescence microscopy. For bioconjugation applications, proteins or other biomolecules are functionalized with alkynes and then conjugated to azide-containing molecules. The resulting conjugates are characterized by SDS-PAGE, mass spectrometry, or other appropriate methods.
Animal Protocol
For in vivo imaging or therapeutic studies, mice bearing tumors or other targets are administered 3-Azidopropanol conjugates (e.g., fluorescent or drug conjugates) via intravenous injection. For imaging studies, fluorescence or radioactivity is monitored over time using appropriate imaging systems. For therapeutic studies, efficacy is evaluated by measuring tumor volume or disease biomarkers. Biodistribution is assessed by ex vivo analysis of organs and tissues at study termination.
ADME/Pharmacokinetics
Pharmacokinetic properties of 3-Azidopropanol are typically characterized for the complete conjugates rather than the click reagent itself. The compound has a molecular weight of 101.11 and is a small molecule with good solubility in water and organic solvents. The azide group is stable in biological environments while maintaining reactivity with alkynes. The compound is typically stored at 2-8°C or -20°C to maintain stability.
Toxicity/Toxicokinetics
3-Azidopropanol is a chemical reagent intended for research use only and is not approved for human therapeutic use. As a click chemistry reagent, it is used in the synthesis of bioconjugates, drug delivery systems, and functional materials. The compound should be handled with standard laboratory safety precautions. The azide group can be potentially explosive, and appropriate safety measures should be taken when handling and storing this compound.
References

[1]. Recent applications of click chemistry in drug discovery. Expert Opin Drug Discov. 2019 Aug;14(8):779-789.

Additional Infomation
3-Azidopropanol is a click chemistry reagent with molecular formula C3H7N3O and molecular weight 101.11. The azide group enables copper-catalyzed or strain-promoted azide-alkyne cycloaddition with alkyne-functionalized molecules. The primary alcohol provides a handle for further functionalization. The compound is used in bioconjugation, drug delivery, and material science applications. It is for research use only and has not been approved for clinical applications.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C3H7N3O
Molecular Weight
101.11
Exact Mass
101.059
CAS #
72320-38-8
PubChem CID
10996974
Appearance
Colorless to light yellow liquid
Density
1.095 g/cm3at 25°C (lit.)
Boiling Point
64 °C at 2 Torr (lit.)
Flash Point
87.77 °C - closed cup(lit.)
LogP
0.131
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
3
Rotatable Bond Count
3
Heavy Atom Count
7
Complexity
76.2
Defined Atom Stereocenter Count
0
SMILES
C(CN=[N+]=[N-])CO
InChi Key
WHVSIWLMCCGHFW-UHFFFAOYSA-N
InChi Code
InChI=1S/C3H7N3O/c4-6-5-2-1-3-7/h7H,1-3H2
Chemical Name
3-azidopropan-1-ol
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : 100 mg/mL (989.02 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (24.73 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.5 mg/mL (24.73 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 2.5 mg/mL (24.73 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 9.8902 mL 49.4511 mL 98.9022 mL
5 mM 1.9780 mL 9.8902 mL 19.7804 mL
10 mM 0.9890 mL 4.9451 mL 9.8902 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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