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2-Aminopurine

Cat No.:V9343 Purity: ≥98%
2-Aminopurine is a fluorescent analog of guanosine and adenosine and is a extensively used fluorescence decay-based DNA structural probe.
2-Aminopurine
2-Aminopurine Chemical Structure CAS No.: 452-06-2
Product category: New1
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
100mg
Other Sizes

Other Forms of 2-Aminopurine:

  • 2-Aminopurine diHCl
Official Supplier of:
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Top Publications Citing lnvivochem Products
Product Description
2-Aminopurine is a fluorescent analog of guanosine and adenosine and is a extensively used fluorescence decay-based DNA structural probe. When 2-Aminopurine is inserted into an oligonucleotide, its fluorescence is highly quenched by stacking with native bases. 2-Aminopurine has been used to probe the structure and dynamics of nucleic acids.
Biological Activity I Assay Protocols (From Reference)
Targets
2-Aminopurine has multiple targets, including double-stranded RNA-dependent protein kinase (PKR), cyclin-dependent kinase 2 (CDK2), and eukaryotic translation initiation factor 2α kinases. 2-AP inhibits PKR by competitively binding to the ATP-binding site of the kinase, thereby blocking its kinase activity. It also inhibits CDK2 through ATP-binding site interactions, affecting cell cycle regulation. Additionally, in hypothalamic cells, 2-AP inhibits leptin signal transduction at the level of the Ob-Rb leptin receptor, dose-dependently suppressing the phosphorylation of STAT3, ERK, and JNK.
ln Vitro
2-Aminopurine's nucleic acid base is greatly quenched by trona when it is incorporated into an oligonucleotide, making it unavailable as a nucleic acid marker. But the precise and accurate fluorescent label for nucleic acid structures is 2-aminopurine, thanks to its extremely sensitive property to inter-base quenching [1]. 6-aminopurine differs from 2-aminopurine merely in the position outside the ring, but its fluorescence intensity is hundreds of times greater than that of purine and adenine [1].
2-Aminopurine exhibits multiple in vitro biological activities: (1) It inhibits PKR kinase activity via competitive binding to the ATP site;
(2) In A549 lung cancer cells, 2-AP reverses TGF-β1-induced epithelial-mesenchymal transition (EMT), restores E-cadherin expression, inhibits fibronectin and vimentin expression, and suppresses cell metastasis;
(3) It inhibits total cellular RNA and protein synthesis in a concentration-dependent manner in multiple cell lines, including C6-2B, HeLa, Swiss 3T3, and BALB/c cells.
ln Vivo
In vivo activity of 2-Aminopurine has been demonstrated in various animal models. In a mouse model of pulmonary fibrosis, 2-AP treatment significantly reduced bleomycin-induced pulmonary inflammation, EMT, and fibrosis, along with decreased mortality. In a sepsis mouse model, 2-AP alleviated organ dysfunction and reduced plasma inflammatory factor levels. In an ApoE-/- mouse atherosclerosis model, oral administration of 200 mg/kg once every other day for 30 days significantly reduced atherosclerotic plaque area. In a Chagas disease mouse model, 2-AP improved cardiac pathology by inhibiting ER stress and reduced ventricular enlargement. The antiviral prodrug derivative APD was safe in a woodchuck model of chronic HBV infection, producing dose-dependent reductions in serum WHV viremia following 4 weeks of oral administration.
Enzyme Assay
In vitro enzyme assays typically employ 2-aminopurine's fluorescence properties. For PKR kinase inhibition assays, experiments are conducted in buffer containing [γ-³²P]ATP, with recombinant PKR and substrates (e.g., histones) incubated with various concentrations of 2-AP. Phosphorylation levels are detected by autoradiography, and double-reciprocal plots are used to analyze competitive inhibition with respect to ATP. For nucleic acid interaction studies, 2-AP fluorophores are incorporated into specific sites of oligonucleotides (e.g., hairpins or mismatch sites). Fluorescence changes are monitored in real time using a fluorescence spectrophotometer, with excitation/emission wavelengths typically at 313/350 nm (or 320/381 nm), measuring emission around 370 nm.
Cell Assay
A typical in vitro cell experiment procedure involves culturing target cells (e.g., HEK293, A549, HeLa, PC12, or V79 cells) in DMEM or RPMI 1640 medium supplemented with 10% fetal bovine serum at 37°C in 5% CO₂ until the logarithmic growth phase. 2-Aminopurine treatment (ranging from 1 μM to 5 mM) is initiated 24 hours after cell seeding. For RNA and protein synthesis inhibition studies, 2-AP is added within the first 4 hours to observe concentration-dependent effects. Cells are treated for 18–40 hours, after which cell lysates are collected for immunoblotting, RNA extraction for quantitative real-time PCR, or flow cytometry for cell cycle analysis.
Animal Protocol
In vivo experiments are typically conducted in rodent models, including C57BL/6 mice, ApoE knockout mice, and Wistar rats. Animals are acclimated for one week prior to dosing and randomly divided into control and 2-AP treatment groups. 2-AP is administered by oral gavage every other day at doses ranging from 200 to 400 mg/kg body weight for 30 days. In sepsis models, the cecal ligation puncture method is used to establish the model, and serum is collected 24 hours post-operation for detection of ALT, AST, Cr, BUN, and inflammatory cytokines. Endpoints typically include survival observation, histopathological examination, serum biochemical analysis, and target tissue protein expression detection (e.g., Western blot for phosphorylated proteins).
ADME/Pharmacokinetics
Direct systemic pharmacokinetic data for 2-Aminopurine are limited; most information is derived from studies of its prodrug derivative APD. In a woodchuck model, APD is efficiently converted to the active metabolite DXG after oral administration, with higher serum concentrations of DXG following oral versus intravenous administration, indicating significant first-pass intestinal and/or hepatic metabolism. Oral administration of APD (1, 3, 10, 30 mg/kg) produced dose-dependent antiviral responses characterized by reductions in serum WHV viremia. A related analog, Cyclo-D4G, in rats showed an elimination half-life of 0.78±0.14 h after intravenous administration and 0.83±0.13 h after oral administration, with an oral bioavailability of 26.9%.
Toxicity/Toxicokinetics
2-Aminopurine is classified as harmful. Acute toxicity data show oral LD₅₀ (rat) of 723 mg/kg and intraperitoneal LD₅₀ (rat) of 270 mg/kg. Mouse toxicological studies demonstrated that the 400 mg/kg dose group of 2-AP resulted in 100% mortality within 14 days, with undigested food accumulation in the stomach but no significant pathological changes in other organs. The 300 mg/kg dose retarded growth without causing death, while doses of 200 mg/kg or lower once every other day did not reduce food intake, alter serum glucose levels or body weight, or increase mortality, and can be used for mouse treatment without detectable adverse effects. Hazard statements include harmful if swallowed (H302), causes skin irritation (H315), and causes serious eye irritation (H319). This compound exhibits weak mutagenic activity in vitro but is inactive as a carcinogen in
References

[1]. 2-Aminopurine fluorescence quenching and lifetimes: role of base stacking. Proc Natl Acad Sci U S A. 2001 Jan 2;98(1):37-41.

[2]. Decreased glycation and structural protection properties of γ-glutamyl-S-allyl-cysteine peptide isolated from fresh garlic scales (Allium sativum L.). Nat Prod Res. 2015;29(23):2219-22.

Additional Infomation
2-Aminopurine is the parent compound of the 2-aminopurine class of compounds, consisting of a purine core and an amino substituent at the 2-position. It is an antimetabolite. It is a member of the 2-aminopurine class of compounds and also a nucleobase analog. It is an isomer of adenine (6-aminopurine).
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C5H5N5
Molecular Weight
135.1267
Exact Mass
135.054
CAS #
452-06-2
Related CAS #
2-Aminopurine dihydrochloride;1428126-74-2
PubChem CID
9955
Appearance
Light yellow to yellow solid powder
Density
1.9±0.1 g/cm3
Boiling Point
328.2±25.0 °C at 760 mmHg
Melting Point
280-282 °C(lit.)
Flash Point
152.3±23.2 °C
Vapour Pressure
0.0±0.7 mmHg at 25°C
Index of Refraction
1.954
LogP
-1.33
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
4
Rotatable Bond Count
0
Heavy Atom Count
10
Complexity
127
Defined Atom Stereocenter Count
0
InChi Key
MWBWWFOAEOYUST-UHFFFAOYSA-N
InChi Code
InChI=1S/C5H5N5/c6-5-7-1-3-4(10-5)9-2-8-3/h1-2H,(H3,6,7,8,9,10)
Chemical Name
7H-purin-2-amine
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: This product requires protection from light (avoid light exposure) during transportation and storage.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~5 mg/mL (~37.00 mM)
H2O : ~1.35 mg/mL (~9.99 mM)
Solubility (In Vivo)
Solubility in Formulation 1: 2.5 mg/mL (18.50 mM) in PBS (add these co-solvents sequentially from left to right, and one by one), clear solution; with sonication (<60°C).

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 7.4003 mL 37.0014 mL 74.0028 mL
5 mM 1.4801 mL 7.4003 mL 14.8006 mL
10 mM 0.7400 mL 3.7001 mL 7.4003 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
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g/mol

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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Clinical Trial Information
NCT Number Recruitment interventions Conditions Sponsor/Collaborators Start Date Phases
NCT06210750 WITHDRAWN Procedure: Biospecimen Collection
Procedure: Bone Marrow Aspiration
Procedure: Bone Marrow Biopsy
T Acute Lymphoblastic Leukemia
T Lymphoblastic Lymphoma
National Cancer Institute (NCI) 2024-08-09 Phase 2
NCT02521493 ACTIVE, NOT RECRUITING Drug: Asparaginase
Drug: Asparaginase Erwinia chrysanthemi
Drug: Cytarabine
Acute Myeloid Leukemia
Down Syndrome
Myelodysplastic Syndrome
Myeloid Leukemia Associated With Down Syndrome
Myeloproliferative Neoplasm
Children's Oncology Group 2015-12-23 Phase 3
NCT04546399 SUSPENDED Radiation: 3-Dimensional Conformal Radiation Therapy
Biological: Blinatumomab
Drug: Cyclophosphamide
Down Syndrome
Recurrent B Acute Lymphoblastic Leukemia
National Cancer Institute (NCI) 2020-12-04 Phase 2
NCT03007147 ACTIVE, NOT RECRUITING Procedure: Allogeneic Hematopoietic Stem Cell Transplantation
Drug: Calaspargase Pegol
Drug: Cyclophosphamide
Acute Lymphoblastic Leukemia
B Acute Lymphoblastic Leukemia
Mixed Phenotype Acute Leukemia
T Acute Lymphoblastic Leukemia
Children's Oncology Group 2017-08-08 Phase 3
NCT06317662 NOT YET RECRUITING Drug: Asparaginase Erwinia chrysanthemi
Procedure: Biospecimen Collection
Biological: Blinatumomab
Acute Leukemia of Ambiguous Lineage
B Acute Lymphoblastic Leukemia
National Cancer Institute (NCI) 2024-10-28 Phase 2
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