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1821214-50-9

Cat No.:V43115 Purity: ≥98%
TT3 is an ionizable lipid material used for the delivery of mRNA and CRISPR/Cas9.
1821214-50-9
1821214-50-9 Chemical Structure CAS No.: 1821214-50-9
Product category: New3
This product is for research use only, not for human use. We do not sell to patients.
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1mg
5mg
10mg
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Other Forms of 1821214-50-9:

  • N1,N3,N5-Tris(4-dodecylhexadecyl)benzene-1,3,5-tricarboxamide
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Top Publications Citing lnvivochem Products
Product Description
TT3 is an ionizable lipid material used for the delivery of mRNA and CRISPR/Cas9.
TT3 is an ionizable cationic amino lipid with a molecular formula of C90H174N6O3 and a molecular weight of approximately 1388.38. It is designed for the delivery of nucleic acid therapeutics, such as mRNA and CRISPR/Cas9 components. As a lipid-like nanoparticle (LLN) component, it facilitates the encapsulation and intracellular release of genetic materials, making it a key excipient in gene editing and protein replacement therapy research.
Biological Activity I Assay Protocols (From Reference)
Targets
Toll-like receptor 3 (TLR3) and TLR7/8. Poly(I:C) is recognized by TLR3, while its potassium salt form is recognized by TLR7/8, mimicking viral double-stranded RNA. This interaction triggers the innate immune response, activating downstream signaling pathways that lead to the production of inflammatory cytokines and type I interferons. As a synthetic dsRNA analog, it serves as a potent pathogen-associated molecular pattern (PAMP) to study immune activation and antiviral defense mechanisms.
ln Vitro
TT3 is used to formulate lipid nanoparticles (LNPs) for mRNA delivery. In vitro studies with LNPs containing TT3 have demonstrated efficient cellular uptake and endosomal escape, leading to high transfection efficiency. Encapsulation of reporter mRNAs results in robust protein expression in various cell lines, with minimal cytotoxicity compared to traditional cationic lipids. The ionizable nature of TT3 enables low toxicity and high potency, as it remains neutral at physiological pH but becomes positively charged in the acidic endosomal environment to facilitate membrane disruption and cargo release.
ln Vivo
In vivo studies of TT3-containing LNPs show effective delivery of mRNA encoding human coagulation Factor IX, inducing sustained Factor IX expression in the plasma of mice after a single administration. These LNPs demonstrated favorable biodistribution, with significant accumulation in the liver, and elicited a robust and durable protein expression profile. The ionizable lipid-based formulation shows a favorable safety profile, with minimal elevation of liver enzymes and inflammatory cytokines, supporting its potential for in vivo gene therapy applications.
Enzyme Assay
TT3 lipid formulations are prepared in organic solvents such as ethanol or DMSO, then combined with other lipids (e.g., DSPC, cholesterol, PEG-lipid) in an acidic buffer to form LNPs via microfluidic mixing. The ionizable lipid is dissolved at a concentration of 10-20 mg/mL in ethanol, then mixed with an aqueous phase at a 1:3 volume ratio using a microfluidic device. The resulting LNPs are dialyzed against PBS to remove ethanol and adjust to neutral pH. Particle size (typically 50-150 nm) and polydispersity are measured by dynamic light scattering (DLS), and encapsulation efficiency is determined using a RiboGreen assay.
Cell Assay
Cells are seeded in 96-well plates at a density of 1×10⁴ to 5×10⁴ cells per well 24 hours before transfection. LNPs containing mRNA or CRISPR/Cas9 components are diluted in Opti-MEM or serum-free medium to a concentration range of 0.1-10 microg/mL and added to cells. After 4-6 hours of incubation, the medium is replaced with complete growth medium. Protein expression is assessed 24-72 hours post-transfection by flow cytometry, Western blot, or luminescence assays. Knockout efficiency for CRISPR/Cas9 is evaluated by T7E1 assay or sequencing 48-72 hours post-transfection. Cell viability is measured using MTT or CellTiter-Glo assays.
Animal Protocol
For in vivo studies, TT3-based LNPs encapsulating mRNA or sgRNA/Cas9 are typically administered intravenously via tail vein injection at doses ranging from 0.5 to 5 mg/kg of total RNA. For mRNA delivery, blood samples are collected at various time points (e.g., 6, 24, 48, 72 hours, and 7 days post-injection) to measure protein expression by ELISA. For tissue distribution, mice are euthanized, and organs (liver, spleen, kidney, lung, heart) are collected for mRNA quantification by qRT-PCR or protein analysis by Western blot. Serum levels of liver enzymes (ALT, AST) and inflammatory cytokines (IL-6, TNF-alpha) are measured to assess hepatotoxicity and immunogenicity.
ADME/Pharmacokinetics
Pharmacokinetic studies of TT3-based LNPs show an elimination half-life of approximately 4-8 hours in circulation, with rapid clearance from the blood and accumulation primarily in the liver (accounting for ~70-80% of the injected dose) due to interaction with ApoE and uptake by hepatocytes via LDL receptors. The LNPs exhibit a multi-phasic clearance pattern: an initial distribution phase (0-2 hours) followed by a slower elimination phase. Tissue concentrations peak within 2-6 hours post-injection, with levels gradually declining over 48-72 hours. Minimal accumulation is observed in the heart and lungs, indicating favorable biodistribution for liver-targeted applications. In vitro release studies show sustained cargo release over 24-48 hours.
Toxicity/Toxicokinetics
TT3-based LNPs generally exhibit a favorable toxicological profile in preclinical studies. Acute toxicity studies in mice at doses up to 5 mg/kg demonstrate no significant mortality or adverse clinical signs. Repeated-dose toxicity studies (e.g., three doses over 7-14 days) show mild, reversible elevations in ALT and AST (1.5-2 fold above baseline) and transient increases in pro-inflammatory cytokines such as IL-6 and TNF-alpha, which typically resolve within 48-72 hours. Histopathological examination reveals minimal to mild vacuolation in liver tissue without evidence of necrosis or fibrosis. No significant hematological abnormalities or organ weight changes are observed. Further safety studies are recommended for chronic dosing regimens.
References

[1]. An Orthogonal Array Optimization of Lipid-like Nanoparticles for mRNA Delivery in Vivo. Nano Lett. 2015;15(12):8099-8107.

[2]. A non-viral CRISPR/Cas9 delivery system for therapeutically targeting HBV DNA and pcsk9 in vivo. Cell Res. 2017;27(3):440-443.

Additional Infomation
TT3 is a research-grade ionizable lipid not yet approved for human therapeutic use. Its primary application is in the formulation of lipid nanoparticles for the delivery of mRNA and CRISPR/Cas9 gene editing systems. Due to its ionizable headgroup and long hydrocarbon tails, it enables efficient nucleic acid encapsulation, promotes endosomal escape, and minimizes toxicity associated with permanently cationic lipids. TT3 is structurally classified as an amino lipid and is typically stored at -20degC to maintain stability. It is available in quantities ranging from 1 mg to larger custom sizes and is intended for laboratory research use only, not for clinical administration.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C90H174N6O3
Molecular Weight
1388.38298749924
Exact Mass
1387.364
CAS #
1821214-50-9
Related CAS #
N1,N3,N5-Tris(4-dodecylhexadecyl)benzene-1,3,5-tricarboxamide;2922283-38-1
PubChem CID
122388678
Appearance
Light yellow to yellow ointment
LogP
34.4
Hydrogen Bond Donor Count
3
Hydrogen Bond Acceptor Count
6
Rotatable Bond Count
81
Heavy Atom Count
99
Complexity
1380
Defined Atom Stereocenter Count
0
InChi Key
KIOSQLHXJYTPDN-UHFFFAOYSA-N
InChi Code
InChI=1S/C90H174N6O3/c1-7-13-19-25-31-37-43-49-55-61-73-94(74-62-56-50-44-38-32-26-20-14-8-2)79-67-70-91-88(97)85-82-86(89(98)92-71-68-80-95(75-63-57-51-45-39-33-27-21-15-9-3)76-64-58-52-46-40-34-28-22-16-10-4)84-87(83-85)90(99)93-72-69-81-96(77-65-59-53-47-41-35-29-23-17-11-5)78-66-60-54-48-42-36-30-24-18-12-6/h82-84H,7-81H2,1-6H3,(H,91,97)(H,92,98)(H,93,99)
Chemical Name
1-N,3-N,5-N-tris[3-(didodecylamino)propyl]benzene-1,3,5-tricarboxamide
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~100 mg/mL (~72.03 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (1.80 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.5 mg/mL (1.80 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 2.5 mg/mL (1.80 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 0.7203 mL 3.6013 mL 7.2026 mL
5 mM 0.1441 mL 0.7203 mL 1.4405 mL
10 mM 0.0720 mL 0.3601 mL 0.7203 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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