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1-Deoxymannojirimycin HCl

Cat No.:V41928 Purity: ≥98%
1-Deoxymannojirimycin HCl is a selective class I α1,2-mannosidase inhibitor (antagonist) with IC50 of 20 μM.
1-Deoxymannojirimycin HCl
1-Deoxymannojirimycin HCl Chemical Structure CAS No.: 73465-43-7
Product category: New2
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
5mg
Other Sizes
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Product Description
1-Deoxymannojirimycin HCl is a selective class I α1,2-mannosidase inhibitor (antagonist) with IC50 of 20 μM. 1-Deoxymannojirimycin HCl is also an N-linked glycosylation inhibitor that can inhibit HIV-1 strains and has anti-viral effect.
1-Deoxymannojirimycin HCl is an inhibitor of mannosidase I, an enzyme involved in the processing of N-linked glycoproteins【1】. It is a sugar analog that inhibits the trimming of mannose residues from glycoproteins in the endoplasmic reticulum. 1-Deoxymannojirimycin HCl is used in glycobiology research to study the role of glycosylation in protein function and trafficking【1】. Its molecular formula is C6H14ClNO4 with a molecular weight of 199.63【1】.
Biological Activity I Assay Protocols (From Reference)
Targets
1-Deoxymannojirimycin HCl targets mannosidase I, an α-1,2-mannosidase that catalyzes the removal of mannose residues from N-linked glycoproteins during glycoprotein processing in the endoplasmic reticulum. By inhibiting mannosidase I, the compound blocks the early steps of N-glycan processing, leading to the accumulation of high-mannose glycoproteins. This inhibition is used to study the role of N-glycosylation in protein folding, trafficking, and function【1】.
ln Vitro
In vitro, 1-Deoxymannojirimycin HCl is an inhibitor of mannosidase I that is used in glycobiology research【1】. By blocking mannosidase I activity, the compound prevents the trimming of mannose residues from N-linked glycoproteins, leading to the accumulation of high-mannose glycoproteins. This allows researchers to study the role of N-glycosylation in protein folding, trafficking, and function in various cell types【1】.
ln Vivo
In vivo, 1-Deoxymannojirimycin HCl is used in research to study glycoprotein processing and the role of glycosylation in various biological processes. However, the compound is not administered as a therapeutic agent. Its primary use is in biochemical and cell biology studies to investigate the function of N-linked glycosylation【1】.
Enzyme Assay
For in vitro enzyme assays, recombinant mannosidase I or mannosidase I-containing cell lysates are incubated with a fluorogenic or chromogenic substrate (such as p-nitrophenyl-α-D-mannopyranoside) in assay buffer. The test compound is added at various concentrations (0.1-1000 µM). Enzyme activity is measured by monitoring absorbance or fluorescence over time. IC50 values are calculated by fitting dose-response curves【1】.
Cell Assay
For cell-based assays, cells are treated with 1-Deoxymannojirimycin HCl at concentrations ranging from 0.1-1000 µM for 24-72 hours. Glycoprotein processing is assessed by analyzing the glycosylation status of specific proteins by Western blotting or by using lectin binding assays. Protein trafficking and function can be assessed using functional assays【1】.
Animal Protocol
For in vivo studies, 1-Deoxymannojirimycin HCl is not typically administered to animals as a therapeutic agent. It may be used in ex vivo preparations or in cell culture studies to investigate glycoprotein processing. Its primary use is in in vitro glycobiology research【1】.
ADME/Pharmacokinetics
1-Deoxymannojirimycin HCl is soluble in water and DMSO. Storage is recommended at -20°C for long-term stability. The compound is for research use only and is not intended for human or veterinary use. Standard laboratory safety precautions should be followed when handling this compound【1】.
Toxicity/Toxicokinetics
1-Deoxymannojirimycin HCl is an inhibitor of mannosidase I and is generally considered to have low toxicity at the concentrations used for glycobiology studies. However, it may affect glycoprotein processing and should be handled with care. Standard laboratory safety precautions should be followed when handling this compound【1】.
References

[1]. Structural Basis for Catalysis and Inhibition of N-glycan Processing Class I Alpha 1,2-mannosidases. J Biol Chem. 2000 Dec 29;275(52):41287-98.

[2]. The alpha(1,2)-mannosidase I Inhibitor 1-deoxymannojirimycin Potentiates the Antiviral Activity of Carbohydrate-Binding Agents Against Wild-Type and Mutant HIV-1 Strains Containing Glycan Deletions in gp120. FEBS Lett. 2007 May 15;581(10):2060-4.

Additional Infomation
1-Deoxymannojirimycin HCl is a mannosidase I inhibitor used in glycobiology research to study the role of N-glycosylation in protein folding, trafficking, and function【1】. It is a research tool and is not approved for clinical use.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C6H13NO4.HCL
Molecular Weight
199.63266
Exact Mass
199.061
CAS #
73465-43-7
PubChem CID
11390018
Appearance
Off-white to gray solid powder
Melting Point
183-185ºC
Hydrogen Bond Donor Count
6
Hydrogen Bond Acceptor Count
5
Rotatable Bond Count
1
Heavy Atom Count
12
Complexity
132
Defined Atom Stereocenter Count
4
SMILES
C1[C@H]([C@H]([C@@H]([C@H](N1)CO)O)O)O.Cl
InChi Key
ZJIHMALTJRDNQI-MVNLRXSJSA-N
InChi Code
InChI=1S/C6H13NO4.ClH/c8-2-3-5(10)6(11)4(9)1-7-3;/h3-11H,1-2H2;1H/t3-,4-,5-,6-;/m1./s1
Chemical Name
(2R,3R,4R,5R)-2-(hydroxymethyl)piperidine-3,4,5-triol;hydrochloride
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: Please store this product in a sealed and protected environment, avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
H2O : ~100 mg/mL (~500.93 mM)
DMSO : ~50 mg/mL (~250.46 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 3.5 mg/mL (17.53 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 35.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 3.5 mg/mL (17.53 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 35.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 3.5 mg/mL (17.53 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 35.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


Solubility in Formulation 4: 100 mg/mL (500.93 mM) in PBS (add these co-solvents sequentially from left to right, and one by one), clear solution; with ultrasonication.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 5.0093 mL 25.0463 mL 50.0927 mL
5 mM 1.0019 mL 5.0093 mL 10.0185 mL
10 mM 0.5009 mL 2.5046 mL 5.0093 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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