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Y1693

Cat No.:V147216 Purity: ≥98%
Y1693 is an orally effective RANKL inhibitor with a Kd value of 5.03 μM for hRANKL.
Y1693
Y1693 Chemical Structure CAS No.: 2812381-74-9
Product category: Cathepsin
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
Y1693 is an orally effective RANKL inhibitor with a Kd value of 5.03 μM against hRANKL. Y1693 inhibits the activation of the downstream c-fos/NFATc1 signaling pathway by blocking the interaction between c-fos and RANKL. Y1693 significantly inhibits RANKL-induced osteoclast differentiation, F-actin ring formation, and bone resorption activity, while downregulating the mRNA and protein expression of TRAP, cathepsin K, c-fos, and NFATc1. Y1693 exhibits no significant cytotoxicity to bone marrow-derived macrophages and osteoclast precursor cells and possesses favorable ADME properties. Y1693 can improve osteoporosis induced by ovariectomy in mice and reverse periodontal alveolar bone loss induced by ligation. Y1693 is suitable for research related to osteoporosis and periodontal disease.
Biological Activity I Assay Protocols (From Reference)
ln Vitro
Y1693 (0.1-10 μM; 5-6 days) effectively inhibited RANKL-induced osteoclastogenesis in bone marrow monocytes (BMMs), with an IC50 of 0.52 μM. The inhibition rate was 89.3% at 1 μM and 45.9% at 0.1 μM [1]. Y1693 (1-10 μM; 3 days) showed no cytotoxicity to BMMs at concentrations up to 10 μM [1]. Y1693 (0.1-5 μM; 5-6 days) inhibited RANKL-induced F-actin ring formation in BMM-derived osteoclasts in vitro in a dose-dependent manner [1]. Y1693 (0.5-5 μM; 3 days) downregulated the mRNA expression of TRAP, cathepsin K, c-fos, and NFATc1 in RANKL-stimulated BMM cells in a dose-dependent manner [1]. Y1693 (1–10 μM; 3 days) dose-dependently inhibited the protein expression of c-fos and NFATc1 in RANKL-stimulated BMM cells [1]. Y1693 (0.1–5 μM; 2 days) dose-dependently inhibited RANKL-induced bone resorption of bovine femoral sections by mature osteoclasts, with almost complete inhibition at 5 μM [1].
ln Vivo
Y1693 (20-60 mg/kg; oral administration; once daily, 5 times a week; for 28 days) restored bone mineral density by 23.4% in ovariectomized osteoporotic mice and improved bone loss[1]. Y1693 (20 mg/kg; intraperitoneal injection; once daily; for 28 days) increased alveolar bone mass by 60.7% and bone volume by 51.9% in mice, while also improving ligation-induced periodontal bone loss in mice[1].
Cell Assay
Cell viability assay [1]
Cell Types: Bone marrow-derived macrophages (BMM)
Tested Concentrations: 1 μM, 2.5 μM, 5 μM, 10 μM
Incubation Duration: 3 days
Experimental Results: No cytotoxicity was observed in BMM at concentrations up to 10 μM. Relative cell viability remained above 1.5-fold at all test concentrations (similar to the untreated control group).
Real-time quantitative PCR [1]
Cell Types: Bone marrow-derived macrophages (BMM)
Tested Concentrations: 0.5 μM, 1 μM, 2.5 μM, 5 μM
Incubation Duration: 3 days
Experimental Results: Dose-dependently reduced the upregulation of RANKL-induced osteoclast marker genes. At a concentration of 5 μM, the mRNA levels of TRAP, cathepsin K, c-fos, and NFATc1 were suppressed to near basal (unstimulated) levels. Significant inhibitory effects were also observed at concentrations as low as 0.5 μM.
Western Blot Analysis [1]
Cell Types: Bone marrow-derived macrophages (BMM)
Tested Concentrations: 1 μM, 2.5 μM, 5 μM, 10 μM
Incubation Duration: 3 days
Experimental Results: c-fos and NFATc1 protein expression decreased in a dose-dependent manner. Protein levels gradually decreased as the concentration increased from 1 μM to 10 μM.
Animal Protocol
Animal/Disease Models:C57BL/6 osteoporotic mice (8-week-old females; ovariectomy-induced osteoporosis)[1]
Doses: 20 mg/kg; 60 mg/kg
Route of Administration: Oral; once daily, 5 times a week; for 28 days
Experimental Results: Compared with ovariectomized control mice, bone mineral density increased by 23.4%. Improved osteoporosis-related bone loss.
Animal/Disease Models:BALB/c mouse periodontitis model (8-week-old males; ligation-induced periodontitis) [1]
Doses: 20 mg/kg
Route of Administration: Intraperitoneal injection; once daily for 28 days
Experimental Results: Compared with the ligation-induced periodontitis control group, alveolar bone mass increased by 60.7%. Bone volume increased by 51.9% compared with the ligation-induced periodontitis control group. Vertical alveolar bone mass of M2-M3 increased by 67.0% compared with the ligation-induced periodontitis control group. Alveolar bone structure was preserved.
References

[1]. Development of an Orally Active Small-Molecule Inhibitor of Receptor Activator of Nuclear Factor-κB Ligand. J Med Chem. 2022;65(16):10992-11009.

[2]. A class of 3-amido-β-carboline compounds, their preparation method and use. CN116332929A. 2021-12-23.

These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C28H25N3O
Molecular Weight
419.52
CAS #
2812381-74-9
Appearance
White to off-white solid
SMILES
O=C(C1=CC2=C(NC3=C2C=CC=C3)C(CCC4=CC=CC=C4)=N1)NC5=C(C)C=CC=C5C
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.3837 mL 11.9184 mL 23.8368 mL
5 mM 0.4767 mL 2.3837 mL 4.7674 mL
10 mM 0.2384 mL 1.1918 mL 2.3837 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

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  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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