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PROTAC FAK degrader 3

Cat No.:V143328 Purity: ≥98%
PROTAC FAK degrader 3 is a selective FAK PROTAC degrader (DC50 = 1.08 nM).
PROTAC FAK degrader 3
PROTAC FAK degrader 3 Chemical Structure Product category: FAK
This product is for research use only, not for human use. We do not sell to patients.
Size Price
500mg
1g
Other Sizes
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Product Description
PROTAC FAK degrader 3 is a selective FAK PROTAC degrader (DC50 = 1.08 nM). PROTAC FAK degrader 3 induces FAK degradation via the ubiquitin-proteasome system and binds to FAK and CRBN. By inhibiting the non-catalytic activity of FAK, PROTAC FAK degrader 3 upregulates MHC-I gene transcription and tumor cell surface expression, thereby enhancing antigen presentation and activating cytotoxic CD8 T cells. PROTAC FAK degrader 3 enhances in vivo antitumor activity by promoting MHC-I expression and enhancing T cell activation. PROTAC FAK degrader 3 can be used in cancer research targeting FAK degradation, such as ovarian cancer, hepatocellular carcinoma, and other cancers. (Pink: FAK-IN-3:7, Blue: Thalidomide-4-OH:, Blue + Black: FAK ligand-3:, Black: Linker).
Biological Activity I Assay Protocols (From Reference)
ln Vitro
PROTAC FAK degrader 3 (compound D4) (0-1000 nM, 24 h) can induce FAK degradation in PA-1, ID8, 4T1, H22, HEY, MDA-MB-231 and PLC/PRF5 cells. In PA-1 cells, 50 nM can induce 89% FAK degradation and 500 nM can induce 92% FAK degradation [1]. PROTAC FAK degrader 3 (1 μM) can inhibit the kinase activity of FAK (99%) (IC50 = 0.44 nM), STK33 (92%), CLK4 (87%) and Fes (86%) [1]. PROTAC FAK degrader 3 (0.01-100 μM, 72 h) has antiproliferative activity against PA-1, HEY and Huh-7 cells [1]. PROTAC FAK degrader 3 (0-3 μM, 1-7 days) reduced the colony formation, migration and invasion of PA-1 cells [1]. PROTAC FAK degrader 3 (3 μM, 24 hours) upregulated the expression of genes related to tumor immunogenicity, antigen presentation (HLA-B, HLA-F and B2M) and immunoproteasome-related genes (PSMB8 and PSMB9) in PA-1 cells [1]. PROTAC FAK degrader 3 (3 μM, 24 hours) promoted antigen presentation and MHC-I expression on the surface of ID8, PA-1, H22 and PLC/PRF5 cells [1]. PROTAC FAK degrader 3 (3 μM, 72 hours) promoted the activation and proliferation of antigen-specific CD8 T cells in ID8 cells co-cultured with activated mouse CD8 T cells [1].
ln Vivo
PROTAC FAK degrader 3 (compound D4) (15 mg/kg, intraperitoneal injection, once daily for 8 days) enhances antitumor activity by promoting MHC-I expression and enhancing T cell activation in an H22 tumor mouse model [1].
Cell Assay
Western Blot Analysis [1]
Cell Types: PA-1 cells
Tested Concentrations: 0 nM, 0.14 nM, 0.41 nM, 1.23 nM, 3.7 nM, 11.1 nM, 33.3 nM, 100 nM
Incubation Duration: 0 hours, 1 hour, 2 hours, 4 hours, 6 hours, 12 hours, 24 hours
Experimental Results: Induced FAK degradation, almost completely degraded at 11.1 nM, and almost completely degraded at 24 hours.
Western Blot analysis [1]
Cell Types: ID8, 4T1, H22, HEY, MDA-MB-231 and PLC/PRF5 cells
Tested Concentrations: 1 μM
Incubation Duration: 24 hours
Experimental Results: Induced FAK degradation.
Western Blot Analysis [1]
Cell Types: PA-1, H22 cells
Tested Concentrations: 3, 10, 30 nM
Incubation Duration: 24 hours
Experimental Results: Induced FAK degradation, its degradation activity was comparable to GSK215 ( ), and more effective than BI-3663 ( ).
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RT-PCR[1]
Cell Types: PA-1 cells
Tested Concentrations: 3 μM
Incubation Duration: 24 hours
Experimental Results: Almost no effect on FAK mRNA levels.
Cell migration assay [1]
Cell Types: PA-1 cells
Tested Concentrations: 0.5 μM
Incubation Duration: 24 hours
Experimental Results: Reduced migration and invasion abilities.
Western Blot analysis [1] Cell Types: ID8, PA-1, H22, PLC/PRF5 cells
Tested Concentrations: 3 μM
Incubation Duration: 72 hours
Experimental Results: Induced FAK degradation.

Animal Protocol
Animal/Disease Models:H22 (1 × 106) tumor-bearing syngeneic mouse (6-week-old BALB/cJ) model [1]
Doses: 15 mg/kg
Route of Administration: Intraperitoneal injection, once daily for 8 consecutive days
Experimental Results: Inhibited tumor growth without affecting body weight, enhanced the expression of H2-Kd/H2-Dd on CD45- tumor cells (3.19 times higher than the vector), did not affect the expression of Pd-l1, and the expression level of CD107a was higher (2.82 times higher than the vector), indicating enhanced cytotoxicity.
References

[1]. Identification of a Potent and Selective Focal Adhesion Kinase Proteolysis Targeting Chimera: Targeting Noncatalytic Functions of Focal Adhesion Kinase to Facilitate Antitumor Immunity. J Med Chem. 2025 Jul 31.

These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C48H50N8O9
Molecular Weight
882.96
Appearance
Typically exists as solids at room temperature
SMILES
O=C1CCC2=C1C(OC3=NC(NC4=CC=C(C=C4OC)C(NC5CCN(CC5)CCCCCCCOC6=C7C(C(N(C7=O)C8C(NC(CC8)=O)=O)=O)=CC=C6)=O)=NC9=C3C=CN9)=CC=C2
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
May dissolve in DMSO (in most cases), if not, try other solvents such as H2O, Ethanol, or DMF with a minute amount of products to avoid loss of samples
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.1326 mL 5.6628 mL 11.3255 mL
5 mM 0.2265 mL 1.1326 mL 2.2651 mL
10 mM 0.1133 mL 0.5663 mL 1.1326 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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