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W23-1006

Cat No.:V147071 Purity: ≥98%
W23-1006 is a selective covalent ALKBH5 inhibitor.
W23-1006
W23-1006 Chemical Structure CAS No.: 3035498-92-8
Product category: ALK
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
5mg
10mg
50mg
100mg
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Product Description
W23-1006 is a selective covalent ALKBH5 inhibitor. W23-1006 binds to the C200 site of ALKBH5 with an IC50 value of 3.848 μM. The inhibitory activity of W23-1006 against ALKBH5 is approximately 30-fold and 8-fold stronger than its inhibitory activities against FTO and ALKBH3, respectively. W23-1006 can be used in research on triple-negative breast cancer (TNBC).
Biological Activity I Assay Protocols (From Reference)
ln Vitro
W23-1006 (5 μM; 24 h) significantly increased mA abundance in MDA-MB-231 and BT549 cells [1]. W23-1006 (3.16–31.6 μM; 24 h) inhibited the viability of MDA-MB-231 and BT549 cells [1]. W23-1006 (5 μM) significantly reduced the invasion area of TNBC cells and inhibited cell migration [1]. W23-1006 (5–10 μM) induced apoptosis in MDA-MB-231 cells and reduced the proportion of cells in the G2/M phase [1].
ln Vivo
W23-1006 (25 mg/kg; intraperitoneal injection; once daily for 14 days) has an antitumor effect on breast cancer in vivo [1]. W23-1006 (25 mg/kg; intraperitoneal injection; once daily for 10 days) significantly inhibited lung metastasis of triple-negative breast cancer (TNBC) [1]. The half-life (t1/2) of W23-1006 (single dose 25 mg/kg; intraperitoneal injection) in mice ranged from 0.509 to 0.983 hours, and the peak plasma concentration (Cmax, range 1715-2108 ng/mL) was reached within 15 minutes [1]. Neither 100 mg/kg nor 250 mg/kg doses of W23-1006 (intraperitoneal injection) caused adverse reactions or death in KM mice (22-27 g) [1].
Cell Assay
RT-PCR[1]
Cell Types: MDA-MB-231 and BT549 cells
Tested Concentrations: 5 μM
Incubation Duration: 24 hours
Experimental Results: mA abundance in cells increased significantly.
Cell viability assay [1]
Cell Types: MDA-MB-231 and BT549 cells
Tested Concentrations: 3.16 μM, 10 μM, 31.62 μM
Incubation Duration: 24 hours
Experimental Results: The inhibitory effect on the viability of MDA-MB-231 and BT549 cells was 10.31 μM and 6.338 μM, respectively.
Animal Protocol
Animal/Disease Models:MDA-MB-231 cells[1] were subcutaneously injected into immunodeficient female mice.
Doses: 25 mg/kg (5% DMSO, 10% Kolliphor HS 15, and 85% saline).
Route of Administration: Intraperitoneal injection; once daily for 14 days.
Experimental Results: Tumor volume and weight were significantly reduced. FN1 and Ki-67 protein expression levels were significantly decreased.
Animal/Disease Models:Immunodeficient female mice were injected with MDA-MB-231LMF3 via the tail vein [1].
Doses: 25 mg/kg.
Route of Administration: Intraperitoneal injection; once daily for 10 consecutive days.
Experimental Results: Inhibited lung metastasis of triple-negative breast cancer. No obvious pathological abnormalities were observed in HE staining of multiple organs, including the heart, liver, spleen, lungs, and kidneys. There was no significant difference in the levels of alanine aminotransferase (ALT) and aspartate aminotransferase (AST) in mouse serum, and they had no effect on liver function.
References

[1]. Discovery of a Novel Selective and Cell-Active N6-Methyladenosine RNA Demethylase ALKBH5 Inhibitor. J Med Chem. 2025 Feb 27;68(4):4133-4147.

These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C17H12BRN3O5
Molecular Weight
418.20
CAS #
3035498-92-8
Appearance
Brown to reddish brown solid
SMILES
O=C(/C1=C\C2=CC([N+]([O-])=O)=CC(Br)=C2)NN(C3=CC=C(C=C3)OC)C1=O
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: 请将本产品存放在密封且受保护的环境中(例如氮气下),避免暴露在潮湿环境中。
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~100 mg/mL (~239.12 mM; with sonication)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (5.98 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween-80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), Clear solution.
For example, if 1 mL of working solution is to be prepared, you canAdd 100 μL of DMSO stock solution (25.0 mg/mL) to 400 μL of PEG300 and mix well; then add 50 μL of Tween-80 and mix well; finally add 450 μL of physiological saline and adjust the volume to 1 mL. Preparation of physiological saline: Dissolve 0.9 g of sodium chloride in double-distilled water and dilute to 100 mL to obtain clear physiological saline.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.3912 mL 11.9560 mL 23.9120 mL
5 mM 0.4782 mL 2.3912 mL 4.7824 mL
10 mM 0.2391 mL 1.1956 mL 2.3912 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • Enter 10 in the Concentration box and choose the correct unit (mM)
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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