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5-Ethynyl-2'-deoxyuridine

Cat No.:V38088 Purity: ≥98%
5-Ethynyl-2'-deoxyuridine (EdU) is a thymidine nucleoside analog that can be inserted into replicating DNA molecules during cell growth/proliferation.
5-Ethynyl-2'-deoxyuridine
5-Ethynyl-2'-deoxyuridine Chemical Structure CAS No.: 61135-33-9
Product category: PROTAC Linkers
This product is for research use only, not for human use. We do not sell to patients.
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Product Description
5-Ethynyl-2'-deoxyuridine (EdU) is a thymidine nucleoside analog that can be inserted into replicating DNA molecules during cell growth/proliferation. The conjugation reaction between EdU and dye can perform efficient and rapid cell growth/proliferation detection and analysis. . 5-Ethynyl-2'-deoxyuridine is a PROTAC (PROteolysis TArgeting Chimera) linker of the alkyl chain class, may be utilized to prepare PROTAC protein degraders. 5-Ethynyl-2'-deoxyuridine is a click chemical reagent. It has Alkyne groups and could undergo CuAAc (copper-catalyzed azide-alkyne cycloaddition reaction) with compounds bearing Azide groups.
Biological Activity I Assay Protocols (From Reference)
ln Vitro
5-Ethynyl-2'-deoxyuridine (EdU) staining is a quick, accurate, and repeatable technique for examining the proliferation of cells in the central nervous system [1].
ln Vivo
Two-month-old female mice's dentate gyrus showed a little increase in the amount of 5-Ethynyl-2'-deoxyuridine (EdU; one intraperitoneal injection of EdU at 10, 20, 50, 100, or 200 mg/kg)-positive cells [1].
Animal Protocol
Animal/Disease Models: Two month old female mice[1]
Doses: 10, 20, 50, 100 or 200 mg/kg
Route of Administration: Single injection; intraperitoneally; 4 hrs (hours) after EdU injection, brains were processed for EdU staining.
Experimental Results: EdU positive cell Numbers slightly increased in a dose-dependent manner both in control and running mice.
References

[1]. Evaluation of 5-ethynyl-2'-deoxyuridine staining as a sensitive and reliable method for studying cell proliferation in the adult nervous system. Brain Res. 2010 Mar 10;1319:21-32.

[2]. Small-molecule PROTACs: An emerging and promising approach for the development of targeted therapy drugs. EBioMedicine. 2018 Oct;36:553-562.

These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C11H12N2O5
Molecular Weight
252.22338
Exact Mass
252.075
CAS #
61135-33-9
PubChem CID
472172
Appearance
White to yellow solid powder
Density
1.55g/cm3
Melting Point
199 °C
Index of Refraction
1.644
LogP
-1.3
Hydrogen Bond Donor Count
3
Hydrogen Bond Acceptor Count
5
Rotatable Bond Count
3
Heavy Atom Count
18
Complexity
463
Defined Atom Stereocenter Count
3
SMILES
C#CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)CO)O
InChi Key
CDEURGJCGCHYFH-DJLDLDEBSA-N
InChi Code
InChI=1S/C11H12N2O5/c1-2-6-4-13(11(17)12-10(6)16)9-3-7(15)8(5-14)18-9/h1,4,7-9,14-15H,3,5H2,(H,12,16,17)/t7-,8+,9+/m0/s1
Chemical Name
5-ethynyl-1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidine-2,4-dione
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: This product requires protection from light (avoid light exposure) during transportation and storage.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~50 mg/mL (~198.24 mM)
H2O : ~25 mg/mL (~99.12 mM)
Solubility (In Vivo)
Solubility in Formulation 1: 4 mg/mL (15.86 mM) in PBS (add these co-solvents sequentially from left to right, and one by one), clear solution; with sonication (<60°C).

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.9648 mL 19.8240 mL 39.6479 mL
5 mM 0.7930 mL 3.9648 mL 7.9296 mL
10 mM 0.3965 mL 1.9824 mL 3.9648 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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In vivo Formulation Calculator (Clear solution)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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