D-I03

Alias: DI03; D I03; D-I03
Cat No.:V40642 Purity: ≥98%
D-I03 (DI03) is a novel and potent RAD52 inhibitor (Kd= 25.8 µM) with anticancer activity.
D-I03 Chemical Structure CAS No.: 688342-78-1
Product category: DNA(RNA) Synthesis
This product is for research use only, not for human use. We do not sell to patients.
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Product Description

D-I03 (DI03) is a novel and potent RAD52 inhibitor (Kd = 25.8 µM) with anticancer activity. RAD52 is a member of the homologous recombination (HR) pathway that is important for maintenance of genome integrity. While RAD52 mutations alone do not significantly affect a mammal's phenotype, they can be fatal when combined with mutations in other genes, such as BRCA1, BRCA2, PALB2, and RAD51C, that result in ovarian and breast cancer that is inherited. As such, RAD52 might be a crucial target for cancer treatment. D-I03 inhibits the growth of BRCA1- and BRCA2-deficient cells and prevents SSA and D-loop formation that are dependent on RAD52. also prevents the development of RAD52 foci brought on by damage, but has no effect on RAD51 foci brought on by cisplatin.

Biological Activity I Assay Protocols (From Reference)
Targets
RAD52 ( Ki = 25.8 µM )
ln Vitro
D-I03 (0-10 μM; on days 1 and 3; Capan-1 and UWB1.289 cells) treatment preferentially inhibited the growth of UWB1.289 and Capan-1 cells in a concentration-dependent manner[1].
D-I03 inhibits the formation of RAD52 foci in BCR-ABL1-positive, BRCA1-deficient 32Dcl3 murine hematopoietic cell line, which expresses GFP-RAD52, in response to cisplatin. The percentage of cells with RAD52 foci drops from 38.7% to 171% in the presence of D-I03 (2.5 μM); concurrently, the percentage of cells treated with ciprofloxacin without foci rises from 48.4% to 71.9%. ? D-I03 has no effect on RAD51 foci that are brought on by cisplatin. D-I03 exhibits low genotoxicity as evidenced by its inability to induce either RAD51 or RAD52 foci in BRCA1-deficient cells when used alone [1].
ln Vivo
D-I03 (50 mg/kg/day; intraperitoneal injection; daily; for 7 days; nu/nu mice) treatment slows the growth of MDA-MB-436 tumors that lack BRCA1. Talazoparib puls D-I03 exhibits negligible toxicity against normal tissues and organs and has no effect on the growth of tumors that are BRCA1-proficient[3]. The results of pharmacokinetic and toxicity studies show that D-I03 has a maximal concentration in peripheral blood of >1 μM at a maximal tolerated dose of ≥50 mg/kg and t1/2 of 23.4 hours[1].
Cell Assay
Cell Line: Capan-1 (BRCA2−) and UWB1.289 (BRCA1+) cells
Concentration: 0 μM, 2.5 μM, 5 μM, or 10 μM
Incubation Time: On days 1 and 3
Result: Preferentially suppressed the growth of Capan-1 and UWB1.289 cells.
Animal Protocol
Nu/nu mice injected with BRCA1-deficient MDA-MB-436 cells
50 mg/kg/day
Intraperitoneal injection; daily; for 7 days
References

[1]. Targeting BRCA1- and BRCA2-deficient cells with RAD52 small molecule inhibitors. Nucleic Acids Res. 2016 May 19;44(9):4189-99.

[2]. Small-Molecule Inhibitors Targeting DNA Repair and DNA Repair Deficiency in Research and Cancer Therapy. Cell Chem Biol. 2017 Sep 21;24(9):1101-1119.

[3]. Simultaneous Targeting of PARP1 and RAD52 Triggers Dual Synthetic Lethality in BRCA-Deficient Tumor Cells. Cell Rep. 2018 Jun 12;23(11):3127-3136.

These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C₂₃H₃₆N₆S
Molecular Weight
428.64
Exact Mass
428.27
Elemental Analysis
C, 64.45; H, 8.47; N, 19.61; S, 7.48
CAS #
688342-78-1
Appearance
Solid powder
SMILES
CCN1CCN(CC1)C2=NC3=C(C=C(C=C3)NC(=S)NCCN(CC)CC)C(=C2)C
InChi Key
UXDGHRWOHOPKIL-UHFFFAOYSA-N
InChi Code
InChI=1S/C23H36N6S/c1-5-27(6-2)11-10-24-23(30)25-19-8-9-21-20(17-19)18(4)16-22(26-21)29-14-12-28(7-3)13-15-29/h8-9,16-17H,5-7,10-15H2,1-4H3,(H2,24,25,30)
Chemical Name
1-[2-(diethylamino)ethyl]-3-[2-(4-ethylpiperazin-1-yl)-4-methylquinolin-6-yl]thiourea
Synonyms
DI03; D I03; D-I03
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: 50~86 mg/mL (116.7~200.6 mM)
Ethanol: ~10 mg/mL
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (5.83 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.5 mg/mL (5.83 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 2.5 mg/mL (5.83 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.3330 mL 11.6648 mL 23.3296 mL
5 mM 0.4666 mL 2.3330 mL 4.6659 mL
10 mM 0.2333 mL 1.1665 mL 2.3330 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Biological Data
  • Measurement of D-I03 (A) and D-G23 (B) binding to RAD52. Nucleic Acids Res . 2016 May 19;44(9):4189-99.
  • Effect of RAD52 inhibitors D-G23 and D-I03 (2.5 μM) on GFP-RAD52 foci formation in response to cisplatin (10 μM) treatment. Nucleic Acids Res . 2016 May 19;44(9):4189-99.
  • D-I03 inhibits single-strand annealing (SSA), but not homology dependent recombination (HDR) (gene conversion) in U2OS cells. Nucleic Acids Res . 2016 May 19;44(9):4189-99.
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